Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QQM entry

There is 1 chain in PDB entry 7QQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1443ASP 1855
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7QQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1512 1523Right-handed alpha
Helix 2
AA2
A
1547 1564Right-handed alpha
Helix 3
AA3
A
1568 1577Right-handed alpha
Helix 4
AA4
A
1580 1596Right-handed alpha
Helix 5
AA5
A
1598 1607Right-handed alpha
Helix 6
AA6
A
1608 1620Right-handed alpha
Helix 7
AA7
A
1621 1637Right-handed alpha
Helix 8
AA8
A
1640 1651Right-handed alpha
Helix 9
AA9
A
1652 1668Right-handed alpha
Helix 10
AB1
A
1670 1679Right-handed alpha
Helix 11
AB2
A
1680 1692Right-handed alpha
Helix 12
AB3
A
1703 1717Right-handed alpha
Helix 13
AB4
A
1725 1736Right-handed alpha
Helix 14
AB5
A
1737 1752Right-handed alpha
Helix 15
AB6
A
1755 1764Right-handed alpha
Helix 16
AB7
A
1765 1781Right-handed alpha
Helix 17
AB8
A
1781 1795Right-handed alpha
Helix 18
AB9
A
1800 1812Right-handed alpha
Helix 19
AC1
A
1815 1828Right-handed alpha
Helix 20
AC2
A
1830 1839Right-handed alpha
Helix 21
AC3
A
1840 1852Right-handed alpha
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There are 2 sheets in PDB entry 7QQM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1445 1452first strand
Strand 2
A
1526 1533anti-parallel
Strand 3
A
1499 1503anti-parallel
Strand 4
A
1479 1484anti-parallel
Strand 5
A
1459 1463anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1445 1452first strand
Strand 2
A
1526 1533anti-parallel
Strand 3
A
1499 1503anti-parallel
Strand 4
A
1506 1507anti-parallel
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