Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QQN entry

There are 4 chains in PDB entry 7QQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 50ASP 462
C
 GLY 49ASP 462
B
 PRO 786VAL 790
D
 PHE 785VAL 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7QQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 95Right-handed alpha
Helix 2
AA2
A
117 127Right-handed alpha
Helix 3
AA3
A
157 171Right-handed alpha
Helix 4
AA4
A
175 184Right-handed alpha
Helix 5
AA5
A
187 203Right-handed alpha
Helix 6
AA6
A
205 214Right-handed alpha
Helix 7
AA7
A
215 227Right-handed alpha
Helix 8
AA8
A
228 242Right-handed alpha
Helix 9
AA9
A
247 258Right-handed alpha
Helix 10
AB1
A
259 275Right-handed alpha
Helix 11
AB2
A
277 286Right-handed alpha
Helix 12
AB3
A
287 298Right-handed alpha
Helix 13
AB4
A
310 324Right-handed alpha
Helix 14
AB5
A
332 343Right-handed alpha
Helix 15
AB6
A
344 359Right-handed alpha
Helix 16
AB7
A
362 371Right-handed alpha
Helix 17
AB8
A
372 402Right-handed alpha
Helix 18
AB9
A
407 418Right-handed alpha
Helix 19
AC1
A
422 435Right-handed alpha
Helix 20
AC2
A
437 446Right-handed alpha
Helix 21
AC3
A
447 459Right-handed alpha
Helix 22
AC4
C
76 79Right-handed 310
Helix 23
AC5
C
88 95Right-handed alpha
Helix 24
AC6
C
117 127Right-handed alpha
Helix 25
AC7
C
154 171Right-handed alpha
Helix 26
AC8
C
175 184Right-handed alpha
Helix 27
AC9
C
187 203Right-handed alpha
Helix 28
AD1
C
205 214Right-handed alpha
Helix 29
AD2
C
215 227Right-handed alpha
Helix 30
AD3
C
228 242Right-handed alpha
Helix 31
AD4
C
247 258Right-handed alpha
Helix 32
AD5
C
259 275Right-handed alpha
Helix 33
AD6
C
277 286Right-handed alpha
Helix 34
AD7
C
287 299Right-handed alpha
Helix 35
AD8
C
310 325Right-handed alpha
Helix 36
AD9
C
332 343Right-handed alpha
Helix 37
AE1
C
344 359Right-handed alpha
Helix 38
AE2
C
362 371Right-handed alpha
Helix 39
AE3
C
372 388Right-handed alpha
Helix 40
AE4
C
388 402Right-handed alpha
Helix 41
AE5
C
407 419Right-handed alpha
Helix 42
AE6
C
422 435Right-handed alpha
Helix 43
AE7
C
437 446Right-handed alpha
Helix 44
AE8
C
447 459Right-handed alpha
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There are 4 sheets in PDB entry 7QQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 61first strand
Strand 2
A
131 140anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
111 112anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 87first strand
Strand 2
A
70 75anti-parallel
Strand 3
B
787 789anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
C
131 138anti-parallel
Strand 3
C
103 108anti-parallel
Strand 4
C
111 112anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
C
131 138anti-parallel
Strand 3
C
103 108anti-parallel
Strand 4
C
80 87anti-parallel
Strand 5
C
70 75anti-parallel
Strand 6
D
788 789anti-parallel
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