Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QQY entry

There are 2 chains in PDB entry 7QQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 64THR 284
B
 PRO 1TRP 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 7QQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA2
A
161 166Right-handed 310
Helix 2
AA3
A
170 180Right-handed alpha
Helix 3
AA5
A
279 284Right-handed alpha
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There are 2 sheets in PDB entry 7QQY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
210 221anti-parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
257 262anti-parallel
Strand 5
A
270 276anti-parallel
Strand 6
A
84 90anti-parallel
Strand 7
A
95 105anti-parallel
Strand 8
A
120 130anti-parallel
Strand 9
A
133 144anti-parallel
Strand 10
A
210 221anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
B
2 3anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il