Analysis of interatomic Contacts of Structural Units in PDB entry:
7QS0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QS0 entry

There are 3 chains in PDB entry 7QS0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 305	SER 481
B	ASP 306	SER 481
C	ASP 306	SER 481

There are 3 helices in PDB entry 7QS0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	397	400	Right-handed 310
Helix 2	AA2	B	397	400	Right-handed 310
Helix 3	AA3	C	397	400	Right-handed 310

There are 9 sheets in PDB entry 7QS0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	364	373	parallel
Strand 3	A	475	480	anti-parallel
Strand 4	A	331	334	anti-parallel
Strand 5	A	323	325	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	364	373	parallel
Strand 3	A	430	436	anti-parallel
Strand 4	A	441	446	anti-parallel
Strand 5	A	452	457	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	464	471	anti-parallel
Strand 3	A	378	385	anti-parallel
Strand 4	A	402	408	anti-parallel
Strand 5	A	411	414	anti-parallel
Strand 6	A	420	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	364	373	parallel
Strand 3	B	475	480	anti-parallel
Strand 4	B	331	334	anti-parallel
Strand 5	B	323	325	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	364	373	parallel
Strand 3	B	430	436	anti-parallel
Strand 4	B	441	446	anti-parallel
Strand 5	B	452	457	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	464	471	anti-parallel
Strand 3	B	378	385	anti-parallel
Strand 4	B	402	408	anti-parallel
Strand 5	B	411	414	anti-parallel
Strand 6	B	420	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	364	372	parallel
Strand 3	C	476	480	anti-parallel
Strand 4	C	331	334	anti-parallel
Strand 5	C	323	325	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	364	372	parallel
Strand 3	C	430	436	anti-parallel
Strand 4	C	441	446	anti-parallel
Strand 5	C	452	457	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	355	first strand
Strand 2	C	464	471	anti-parallel
Strand 3	C	378	385	anti-parallel
Strand 4	C	402	408	anti-parallel
Strand 5	C	411	415	anti-parallel
Strand 6	C	420	421	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QS0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QS0