Analysis of interatomic Contacts of Structural Units in PDB entry:
7QSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QSJ entry

There are 2 chains in PDB entry 7QSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6ASP 351
B
 ASP 4GLY 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7QSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 31Right-handed alpha
Helix 2
AA2
A
47 62Right-handed alpha
Helix 3
AA3
A
63 78Right-handed alpha
Helix 4
AA4
A
100 118Right-handed alpha
Helix 5
AA5
A
119 139Right-handed alpha
Helix 6
AA6
A
161 183Right-handed alpha
Helix 7
AA7
A
186 203Right-handed alpha
Helix 8
AA8
A
204 207Right-handed 310
Helix 9
AA9
A
213 223Right-handed alpha
Helix 10
AB1
A
227 242Right-handed alpha
Helix 11
AB2
A
260 273Right-handed alpha
Helix 12
AB3
A
275 285Right-handed alpha
Helix 13
AB4
A
286 290Right-handed 310
Helix 14
AB5
A
313 329Right-handed alpha
Helix 15
AB6
B
17 31Right-handed alpha
Helix 16
AB7
B
47 61Right-handed alpha
Helix 17
AB8
B
63 78Right-handed alpha
Helix 18
AB9
B
100 118Right-handed alpha
Helix 19
AC1
B
119 139Right-handed alpha
Helix 20
AC2
B
161 183Right-handed alpha
Helix 21
AC3
B
186 203Right-handed alpha
Helix 22
AC4
B
204 207Right-handed 310
Helix 23
AC5
B
213 223Right-handed alpha
Helix 24
AC6
B
227 242Right-handed alpha
Helix 25
AC7
B
260 273Right-handed alpha
Helix 26
AC8
B
275 285Right-handed alpha
Helix 27
AC9
B
286 290Right-handed 310
Helix 28
AD1
B
313 329Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7QSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
92 95anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
150 152anti-parallel
Strand 3
A
155 157anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
248 250anti-parallel
Strand 3
A
257 259anti-parallel
Strand 4
A
299 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
92 95anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
150 152anti-parallel
Strand 3
B
155 157anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
248 250anti-parallel
Strand 3
B
257 259anti-parallel
Strand 4
B
299 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il