Analysis of interatomic Contacts of Structural Units in PDB entry:
7QSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QSS entry

There is 1 chain in PDB entry 7QSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASN 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7QSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
109 111Right-handed 310
Helix 3
AA3
A
150 163Right-handed alpha
Helix 4
AA4
A
177 193Right-handed alpha
Helix 5
AA5
A
211 221Right-handed alpha
Helix 6
AA6
A
235 240Right-handed alpha
Helix 7
AA7
A
242 257Right-handed alpha
Helix 8
AA8
A
273 287Right-handed alpha
Helix 9
AA9
A
310 316Right-handed alpha
Helix 10
AB1
A
335 343Right-handed alpha
Helix 11
AB2
A
346 353Right-handed alpha
Helix 12
AB3
A
356 361Right-handed 310
Helix 13
AB4
A
368 377Right-handed alpha
Helix 14
AB5
A
380 386Right-handed alpha
Helix 15
AB6
A
386 390Right-handed alpha
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There are 8 sheets in PDB entry 7QSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
406 413anti-parallel
Strand 3
A
55 69anti-parallel
Strand 4
A
37 52anti-parallel
Strand 5
A
29 34anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
14 17anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
391 402anti-parallel
Strand 4
A
116 120anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 97first strand
Strand 2
A
100 107anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
205 210anti-parallel
Strand 4
A
197 200anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
301 309anti-parallel
Strand 4
A
292 298anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
366 367anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
425 428anti-parallel
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