Analysis of interatomic Contacts of Structural Units in PDB entry:
7QTF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QTF entry

There are 3 chains in PDB entry 7QTF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 9	TYR 288
B	ASP 3	TYR 288
C	ILE 4	SER 57

There are 25 helices in PDB entry 7QTF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	30	Right-handed 310
Helix 2	AA2	A	31	46	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	133	139	Right-handed alpha
Helix 5	AA5	A	141	150	Right-handed alpha
Helix 6	AA6	A	196	212	Right-handed alpha
Helix 7	AA7	A	213	215	Right-handed 310
Helix 8	AA8	B	31	46	Right-handed alpha
Helix 9	AA9	B	57	69	Right-handed alpha
Helix 10	AB1	B	133	139	Right-handed alpha
Helix 11	AB2	B	141	150	Right-handed alpha
Helix 12	AB3	B	196	212	Right-handed alpha
Helix 13	AB4	B	213	215	Right-handed 310
Helix 14	AB5	C	31	46	Right-handed alpha
Helix 15	AB6	C	57	67	Right-handed alpha
Helix 16	AB7	C	133	139	Right-handed alpha
Helix 17	AB8	C	141	150	Right-handed alpha
Helix 18	AB9	C	196	212	Right-handed alpha
Helix 19	AC1	C	213	215	Right-handed 310
Helix 20	AC2	D	31	46	Right-handed alpha
Helix 21	AC3	D	57	67	Right-handed alpha
Helix 22	AC4	D	133	139	Right-handed alpha
Helix 23	AC5	D	141	150	Right-handed alpha
Helix 24	AC6	D	196	212	Right-handed alpha
Helix 25	AC7	D	213	215	Right-handed 310

There are 16 sheets in PDB entry 7QTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	20	23	anti-parallel
Strand 3	A	47	50	parallel
Strand 4	A	227	231	anti-parallel
Strand 5	A	113	120	anti-parallel
Strand 6	A	248	254	anti-parallel
Strand 7	A	83	90	anti-parallel
Strand 8	A	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	128	132	anti-parallel
Strand 3	A	235	239	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	169	first strand
Strand 2	A	152	159	anti-parallel
Strand 3	A	189	192	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	180	182	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	20	23	anti-parallel
Strand 3	B	47	50	parallel
Strand 4	B	227	231	anti-parallel
Strand 5	B	113	120	anti-parallel
Strand 6	B	248	254	anti-parallel
Strand 7	B	83	90	anti-parallel
Strand 8	B	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	220	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	235	239	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	169	first strand
Strand 2	B	152	159	anti-parallel
Strand 3	B	189	192	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	180	182	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	20	23	anti-parallel
Strand 3	C	47	50	parallel
Strand 4	C	227	231	anti-parallel
Strand 5	C	113	120	anti-parallel
Strand 6	C	248	254	anti-parallel
Strand 7	C	83	90	anti-parallel
Strand 8	C	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	220	first strand
Strand 2	C	128	132	anti-parallel
Strand 3	C	235	239	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	169	first strand
Strand 2	C	152	159	anti-parallel
Strand 3	C	189	192	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	180	182	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	20	23	anti-parallel
Strand 3	D	47	50	parallel
Strand 4	D	227	231	anti-parallel
Strand 5	D	113	120	anti-parallel
Strand 6	D	248	254	anti-parallel
Strand 7	D	83	90	anti-parallel
Strand 8	D	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	220	first strand
Strand 2	D	128	132	anti-parallel
Strand 3	D	235	239	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	169	first strand
Strand 2	D	152	159	anti-parallel
Strand 3	D	189	192	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	173	first strand
Strand 2	D	180	182	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QTF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QTF