Analysis of interatomic Contacts of Structural Units in PDB entry:
7QTG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QTG entry

There are 2 chains in PDB entry 7QTG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10PRO 273
B
 PHE 11ARG 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 7QTG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 48Right-handed alpha
Helix 2
AA2
A
59 71Right-handed alpha
Helix 3
AA3
A
135 141Right-handed alpha
Helix 4
AA4
A
143 152Right-handed alpha
Helix 5
AA5
A
198 214Right-handed alpha
Helix 6
AA6
A
215 217Right-handed 310
Helix 7
AA7
B
28 32Right-handed 310
Helix 8
AA8
B
33 48Right-handed alpha
Helix 9
AA9
B
59 68Right-handed alpha
Helix 10
AB1
B
135 141Right-handed alpha
Helix 11
AB2
B
143 152Right-handed alpha
Helix 12
AB3
B
198 214Right-handed alpha
Helix 13
AB4
B
215 217Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 7QTG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
22 25anti-parallel
Strand 3
A
49 52parallel
Strand 4
A
229 233anti-parallel
Strand 5
A
115 122anti-parallel
Strand 6
A
250 256anti-parallel
Strand 7
A
85 91anti-parallel
Strand 8
A
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
237 241anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 171first strand
Strand 2
A
154 161anti-parallel
Strand 3
A
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
182 184anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
22 25anti-parallel
Strand 3
B
49 52parallel
Strand 4
B
229 233anti-parallel
Strand 5
B
113 122anti-parallel
Strand 6
B
250 257anti-parallel
Strand 7
B
85 91anti-parallel
Strand 8
B
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 222first strand
Strand 2
B
130 134anti-parallel
Strand 3
B
237 241anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 171first strand
Strand 2
B
154 161anti-parallel
Strand 3
B
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
182 184anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il