Analysis of interatomic Contacts of Structural Units in PDB entry:
7QTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QTM entry

There are 6 chains in PDB entry 7QTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 43PHE 234
B
 ALA 3VAL 33
B
 VAL 35GLN 180
H
 GLN 43PHE 234
I
 ILE 4VAL 33
I
 VAL 35ALA 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 7QTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 54Right-handed alpha
Helix 2
AA2
A
63 77Right-handed alpha
Helix 3
AA3
A
89 103Right-handed alpha
Helix 4
AA4
A
107 111Right-handed 310
Helix 5
AA5
A
114 128Right-handed alpha
Helix 6
AA6
A
134 136Right-handed 310
Helix 7
AA7
A
137 143Right-handed alpha
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
148 150Right-handed 310
Helix 10
AB1
A
151 161Right-handed alpha
Helix 11
AB2
A
164 184Right-handed alpha
Helix 12
AB3
A
184 189Right-handed alpha
Helix 13
AB4
A
191 204Right-handed alpha
Helix 14
AB5
A
208 215Right-handed alpha
Helix 15
AB6
A
215 229Right-handed alpha
Helix 16
AB7
A
229 234Right-handed alpha
Helix 17
AB8
B
17 28Right-handed alpha
Helix 18
AB9
B
63 67Right-handed 310
Helix 19
AC1
B
69 74Right-handed 310
Helix 20
AC2
B
88 98Right-handed alpha
Helix 21
AC3
B
98 107Right-handed alpha
Helix 22
AC4
B
118 123Right-handed 310
Helix 23
AC5
B
124 133Right-handed alpha
Helix 24
AC6
B
140 152Right-handed alpha
Helix 25
AC7
B
166 179Right-handed alpha
Helix 26
AC8
H
48 54Right-handed alpha
Helix 27
AC9
H
63 77Right-handed alpha
Helix 28
AD1
H
89 102Right-handed alpha
Helix 29
AD2
H
107 111Right-handed 310
Helix 30
AD3
H
114 128Right-handed alpha
Helix 31
AD4
H
134 136Right-handed 310
Helix 32
AD5
H
137 143Right-handed alpha
Helix 33
AD6
H
148 150Right-handed 310
Helix 34
AD7
H
151 161Right-handed alpha
Helix 35
AD8
H
164 183Right-handed alpha
Helix 36
AD9
H
184 189Right-handed alpha
Helix 37
AE1
H
191 204Right-handed alpha
Helix 38
AE2
H
208 215Right-handed alpha
Helix 39
AE3
H
215 229Right-handed alpha
Helix 40
AE4
H
229 234Right-handed alpha
Helix 41
AE5
I
17 28Right-handed alpha
Helix 42
AE6
I
63 67Right-handed 310
Helix 43
AE7
I
69 74Right-handed 310
Helix 44
AE8
I
88 98Right-handed alpha
Helix 45
AE9
I
98 107Right-handed alpha
Helix 46
AF1
I
118 122Right-handed 310
Helix 47
AF2
I
124 133Right-handed alpha
Helix 48
AF3
I
140 152Right-handed alpha
Helix 49
AF4
I
166 179Right-handed alpha
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There are 2 sheets in PDB entry 7QTM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 48first strand
Strand 2
B
51 60anti-parallel
Strand 3
B
4 12parallel
Strand 4
B
79 85parallel
Strand 5
B
112 117parallel
Strand 6
B
155 158parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
39 48first strand
Strand 2
I
51 60anti-parallel
Strand 3
I
5 11parallel
Strand 4
I
79 85parallel
Strand 5
I
112 117parallel
Strand 6
I
155 158parallel
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