Analysis of interatomic Contacts of Structural Units in PDB entry:
7QTV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QTV entry

There are 2 chains in PDB entry 7QTV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 21	TYR 1016
B	LYS 13	ARG 290

There are105 helices in PDB entry 7QTV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	31	Right-handed alpha
Helix 2	AA2	A	40	49	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	80	91	Right-handed alpha
Helix 5	AA5	A	92	115	Right-handed alpha
Helix 6	AA6	A	120	154	Right-handed alpha
Helix 7	AA7	A	208	213	Right-handed alpha
Helix 8	AA8	A	254	257	Right-handed 310
Helix 9	AA9	A	258	269	Right-handed alpha
Helix 10	AB1	A	275	306	Right-handed alpha
Helix 11	AB2	A	309	325	Right-handed alpha
Helix 12	AB3	A	328	347	Right-handed alpha
Helix 13	AB4	A	353	357	Right-handed 310
Helix 14	AB5	A	358	363	Right-handed alpha
Helix 15	AB6	A	408	422	Right-handed alpha
Helix 16	AB7	A	443	457	Right-handed alpha
Helix 17	AB8	A	460	467	Right-handed alpha
Helix 18	AB9	A	503	510	Right-handed alpha
Helix 19	AC1	A	524	542	Right-handed alpha
Helix 20	AC2	A	591	602	Right-handed alpha
Helix 21	AC3	A	613	625	Right-handed alpha
Helix 22	AC4	A	633	641	Right-handed alpha
Helix 23	AC5	A	649	653	Right-handed 310
Helix 24	AC6	A	660	665	Right-handed alpha
Helix 25	AC7	A	667	677	Right-handed alpha
Helix 26	AC8	A	687	701	Right-handed alpha
Helix 27	AC9	A	711	713	Right-handed 310
Helix 28	AD1	A	714	721	Right-handed alpha
Helix 29	AD2	A	732	739	Right-handed alpha
Helix 30	AD3	A	749	775	Right-handed alpha
Helix 31	AD4	A	775	790	Right-handed alpha
Helix 32	AD5	A	796	805	Right-handed alpha
Helix 33	AD6	A	808	816	Right-handed alpha
Helix 34	AD7	A	823	827	Right-handed 310
Helix 35	AD8	A	839	847	Right-handed alpha
Helix 36	AD9	A	849	869	Right-handed alpha
Helix 37	AE1	A	872	877	Right-handed 310
Helix 38	AE2	A	879	885	Right-handed alpha
Helix 39	AE3	A	900	930	Right-handed alpha
Helix 40	AE4	A	936	941	Right-handed alpha
Helix 41	AE5	A	944	964	Right-handed alpha
Helix 42	AE6	A	966	971	Right-handed alpha
Helix 43	AE7	A	977	983	Right-handed 310
Helix 44	AE8	A	984	1005	Right-handed alpha
Helix 45	AE9	A	1008	1015	Right-handed alpha
Helix 46	AF1	B	23	27	Right-handed 310
Helix 47	AF2	B	28	61	Right-handed alpha
Helix 48	AF3	B	69	73	Right-handed 310
Helix 49	AF4	B	94	110	Right-handed alpha
Helix 50	AF5	B	111	113	Right-handed 310
Helix 51	AF6	B	152	156	Right-handed 310
Helix 52	AF7	B	217	224	Right-handed alpha
Helix 53	AF8	B	231	235	Right-handed 310
Helix 54	AF9	G	22	46	Right-handed alpha
Helix 55	AG1	C	22	31	Right-handed alpha
Helix 56	AG2	C	40	49	Right-handed alpha
Helix 57	AG3	C	57	66	Right-handed alpha
Helix 58	AG4	C	80	90	Right-handed alpha
Helix 59	AG5	C	92	115	Right-handed alpha
Helix 60	AG6	C	121	154	Right-handed alpha
Helix 61	AG7	C	254	257	Right-handed 310
Helix 62	AG8	C	258	269	Right-handed alpha
Helix 63	AG9	C	275	306	Right-handed alpha
Helix 64	AH1	C	309	325	Right-handed alpha
Helix 65	AH2	C	328	347	Right-handed alpha
Helix 66	AH3	C	353	355	Right-handed 310
Helix 67	AH4	C	356	362	Right-handed alpha
Helix 68	AH5	C	409	421	Right-handed alpha
Helix 69	AH6	C	443	457	Right-handed alpha
Helix 70	AH7	C	459	467	Right-handed alpha
Helix 71	AH8	C	503	508	Right-handed alpha
Helix 72	AH9	C	524	542	Right-handed alpha
Helix 73	AI1	C	591	602	Right-handed alpha
Helix 74	AI2	C	613	625	Right-handed alpha
Helix 75	AI3	C	633	642	Right-handed alpha
Helix 76	AI4	C	649	653	Right-handed 310
Helix 77	AI5	C	660	665	Right-handed alpha
Helix 78	AI6	C	667	677	Right-handed alpha
Helix 79	AI7	C	687	701	Right-handed alpha
Helix 80	AI8	C	711	713	Right-handed 310
Helix 81	AI9	C	714	721	Right-handed alpha
Helix 82	AJ1	C	732	739	Right-handed alpha
Helix 83	AJ2	C	749	789	Right-handed alpha
Helix 84	AJ3	C	796	805	Right-handed alpha
Helix 85	AJ4	C	808	816	Right-handed alpha
Helix 86	AJ5	C	823	827	Right-handed 310
Helix 87	AJ6	C	839	847	Right-handed alpha
Helix 88	AJ7	C	849	869	Right-handed alpha
Helix 89	AJ8	C	872	877	Right-handed 310
Helix 90	AJ9	C	879	885	Right-handed alpha
Helix 91	AK1	C	900	930	Right-handed alpha
Helix 92	AK2	C	936	941	Right-handed alpha
Helix 93	AK3	C	944	964	Right-handed alpha
Helix 94	AK4	C	966	971	Right-handed alpha
Helix 95	AK5	C	977	983	Right-handed 310
Helix 96	AK6	C	984	1005	Right-handed alpha
Helix 97	AK7	C	1007	1015	Right-handed alpha
Helix 98	AK8	D	28	60	Right-handed alpha
Helix 99	AK9	D	69	73	Right-handed 310
Helix 100	AL1	D	94	111	Right-handed alpha
Helix 101	AL2	D	119	121	Right-handed 310
Helix 102	AL3	D	152	156	Right-handed 310
Helix 103	AL4	D	217	224	Right-handed alpha
Helix 104	AL5	D	231	235	Right-handed 310
Helix 105	AL6	E	22	46	Right-handed alpha

There are 17 sheets in PDB entry 7QTV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	242	251	anti-parallel
Strand 3	A	196	206	anti-parallel
Strand 4	A	218	219	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	741	743	anti-parallel
Strand 3	A	723	727	parallel
Strand 4	A	705	709	parallel
Strand 5	A	365	368	parallel
Strand 6	A	605	609	parallel
Strand 7	A	681	684	parallel
Strand 8	A	656	659	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	544	552	anti-parallel
Strand 5	A	497	502	anti-parallel
Strand 6	A	482	486	anti-parallel
Strand 7	A	469	472	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	511	516	parallel
Strand 5	A	519	521	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	891	892	first strand
Strand 2	A	898	899	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	176	180	anti-parallel
Strand 3	B	259	263	anti-parallel
Strand 4	B	227	230	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	296	301	parallel
Strand 3	B	272	278	anti-parallel
Strand 4	B	208	215	anti-parallel
Strand 5	B	237	239	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	148	149	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	169	170	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	247	253	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	235	236	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	241	244	anti-parallel
Strand 3	C	205	207	anti-parallel
Strand 4	C	218	219	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	741	743	anti-parallel
Strand 3	C	723	727	parallel
Strand 4	C	705	709	parallel
Strand 5	C	365	368	parallel
Strand 6	C	605	609	parallel
Strand 7	C	681	684	parallel
Strand 8	C	656	659	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	577	585	anti-parallel
Strand 4	C	544	552	anti-parallel
Strand 5	C	497	502	anti-parallel
Strand 6	C	483	486	anti-parallel
Strand 7	C	469	473	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	891	892	first strand
Strand 2	C	898	899	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	175	180	anti-parallel
Strand 3	D	258	263	anti-parallel
Strand 4	D	227	230	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	296	301	parallel
Strand 3	D	272	278	anti-parallel
Strand 4	D	208	214	anti-parallel
Strand 5	D	237	239	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	148	149	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QTV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QTV