Analysis of interatomic Contacts of Structural Units in PDB entry:
7QU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QU8 entry

There are 4 chains in PDB entry 7QU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 28LEU 249
B
 PRO 28LEU 249
C
 THR 250LEU 260
D
 THR 250LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7QU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
40 49Right-handed alpha
Helix 3
AA3
A
49 54Right-handed alpha
Helix 4
AA4
A
63 81Right-handed alpha
Helix 5
AA5
A
134 141Right-handed 310
Helix 6
AA6
B
28 32Right-handed 310
Helix 7
AA7
B
40 49Right-handed alpha
Helix 8
AA8
B
49 54Right-handed alpha
Helix 9
AA9
B
63 81Right-handed alpha
Helix 10
AB1
B
134 141Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7QU8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
92 100anti-parallel
Strand 3
A
147 156anti-parallel
Strand 4
A
180 183anti-parallel
Strand 5
C
251 257anti-parallel
Strand 6
A
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
92 100anti-parallel
Strand 3
A
147 156anti-parallel
Strand 4
A
180 183anti-parallel
Strand 5
C
251 257anti-parallel
Strand 6
A
212 219anti-parallel
Strand 7
A
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
130 133anti-parallel
Strand 3
A
193 202anti-parallel
Strand 4
A
241 248anti-parallel
Strand 5
A
233 238anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
92 100anti-parallel
Strand 3
B
147 156anti-parallel
Strand 4
B
180 183anti-parallel
Strand 5
D
251 257anti-parallel
Strand 6
B
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
92 100anti-parallel
Strand 3
B
147 156anti-parallel
Strand 4
B
180 183anti-parallel
Strand 5
D
251 257anti-parallel
Strand 6
B
212 219anti-parallel
Strand 7
B
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
130 133anti-parallel
Strand 3
B
193 202anti-parallel
Strand 4
B
241 248anti-parallel
Strand 5
B
233 238anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il