Analysis of interatomic Contacts of Structural Units in PDB entry:
7QUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QUD entry

There are 2 chains in PDB entry 7QUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 436
B
 ARG 2ALA 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 7QUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
109 128Right-handed alpha
Helix 7
AA7
A
143 161Right-handed alpha
Helix 8
AA8
A
182 195Right-handed alpha
Helix 9
AA9
A
206 216Right-handed alpha
Helix 10
AB1
A
223 244Right-handed alpha
Helix 11
AB2
A
251 260Right-handed alpha
Helix 12
AB3
A
277 281Right-handed 310
Helix 13
AB4
A
287 296Right-handed alpha
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
A
306 310Right-handed 310
Helix 16
AB7
A
324 337Right-handed alpha
Helix 17
AB8
A
383 400Right-handed alpha
Helix 18
AB9
A
404 410Right-handed alpha
Helix 19
AC1
A
415 436Right-handed alpha
Helix 20
AC2
B
10 29Right-handed alpha
Helix 21
AC3
B
41 45Right-handed 310
Helix 22
AC4
B
46 49Right-handed 310
Helix 23
AC5
B
71 79Right-handed alpha
Helix 24
AC6
B
86 88Right-handed 310
Helix 25
AC7
B
100 106Right-handed alpha
Helix 26
AC8
B
108 125Right-handed alpha
Helix 27
AC9
B
143 159Right-handed alpha
Helix 28
AD1
B
180 195Right-handed alpha
Helix 29
AD2
B
204 214Right-handed alpha
Helix 30
AD3
B
222 242Right-handed alpha
Helix 31
AD4
B
249 258Right-handed alpha
Helix 32
AD5
B
285 294Right-handed alpha
Helix 33
AD6
B
295 299Right-handed 310
Helix 34
AD7
B
304 308Right-handed 310
Helix 35
AD8
B
322 337Right-handed alpha
Helix 36
AD9
B
373 390Right-handed alpha
Helix 37
AE1
B
395 400Right-handed alpha
Helix 38
AE2
B
404 428Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7QUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
65 68parallel
Strand 3
A
3 9parallel
Strand 4
A
132 138parallel
Strand 5
A
165 169parallel
Strand 6
A
200 201parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
204 205parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
352 355parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
3 9parallel
Strand 4
B
130 136parallel
Strand 5
B
163 170parallel
Strand 6
B
199 203parallel
Strand 7
B
265 271parallel
Strand 8
B
364 371anti-parallel
Strand 9
B
310 318anti-parallel
Strand 10
B
349 354parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
60 61anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il