Analysis of interatomic Contacts of Structural Units in PDB entry:
7QUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QUY entry

There are 3 chains in PDB entry 7QUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3THR 354
B
 SER 3THR 354
C
 SER 3THR 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7QUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 51Right-handed alpha
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
97 102Right-handed alpha
Helix 4
AA4
A
103 108Right-handed 310
Helix 5
AA5
A
137 144Right-handed alpha
Helix 6
AA6
A
147 155Right-handed 310
Helix 7
AA7
A
158 169Right-handed alpha
Helix 8
AA8
A
183 195Right-handed alpha
Helix 9
AA9
A
205 214Right-handed alpha
Helix 10
AB1
A
227 242Right-handed alpha
Helix 11
AB2
A
257 267Right-handed alpha
Helix 12
AB3
A
289 294Right-handed alpha
Helix 13
AB4
A
305 307Right-handed 310
Helix 14
AB5
A
308 318Right-handed alpha
Helix 15
AB6
A
323 325Right-handed 310
Helix 16
AB7
A
331 333Right-handed 310
Helix 17
AB8
A
334 344Right-handed alpha
Helix 18
AB9
B
42 51Right-handed alpha
Helix 19
AC1
B
78 82Right-handed 310
Helix 20
AC2
B
97 102Right-handed alpha
Helix 21
AC3
B
103 108Right-handed 310
Helix 22
AC4
B
137 144Right-handed alpha
Helix 23
AC5
B
147 155Right-handed 310
Helix 24
AC6
B
158 169Right-handed alpha
Helix 25
AC7
B
183 195Right-handed alpha
Helix 26
AC8
B
205 214Right-handed alpha
Helix 27
AC9
B
227 242Right-handed alpha
Helix 28
AD1
B
257 266Right-handed alpha
Helix 29
AD2
B
289 294Right-handed alpha
Helix 30
AD3
B
305 307Right-handed 310
Helix 31
AD4
B
308 318Right-handed alpha
Helix 32
AD5
B
323 325Right-handed 310
Helix 33
AD6
B
331 333Right-handed 310
Helix 34
AD7
B
334 344Right-handed alpha
Helix 35
AD8
C
42 51Right-handed alpha
Helix 36
AD9
C
78 82Right-handed 310
Helix 37
AE1
C
97 102Right-handed alpha
Helix 38
AE2
C
103 108Right-handed 310
Helix 39
AE3
C
137 144Right-handed alpha
Helix 40
AE4
C
147 155Right-handed 310
Helix 41
AE5
C
158 169Right-handed alpha
Helix 42
AE6
C
183 195Right-handed alpha
Helix 43
AE7
C
205 214Right-handed alpha
Helix 44
AE8
C
227 242Right-handed alpha
Helix 45
AE9
C
257 266Right-handed alpha
Helix 46
AF1
C
289 294Right-handed alpha
Helix 47
AF2
C
305 307Right-handed 310
Helix 48
AF3
C
308 318Right-handed alpha
Helix 49
AF4
C
323 325Right-handed 310
Helix 50
AF5
C
331 333Right-handed 310
Helix 51
AF6
C
334 344Right-handed alpha
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There are 12 sheets in PDB entry 7QUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
18 21anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
66 74anti-parallel
Strand 4
A
85 88anti-parallel
Strand 5
A
134 135anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
350 353anti-parallel
Strand 4
A
327 330parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 222first strand
Strand 2
A
198 203parallel
Strand 3
A
175 179parallel
Strand 4
A
250 253parallel
Strand 5
A
273 276parallel
Strand 6
A
297 300parallel
Strand 7
B
297 300anti-parallel
Strand 8
B
273 276parallel
Strand 9
B
250 253parallel
Strand 10
B
175 179parallel
Strand 11
B
198 203parallel
Strand 12
B
217 222parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
B
284 286anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
18 21anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
31 40anti-parallel
Strand 3
B
66 74anti-parallel
Strand 4
B
85 88anti-parallel
Strand 5
B
134 135anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
31 40anti-parallel
Strand 3
B
350 353anti-parallel
Strand 4
B
327 330parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 9first strand
Strand 2
C
18 21anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 129first strand
Strand 2
C
31 40anti-parallel
Strand 3
C
66 74anti-parallel
Strand 4
C
85 88anti-parallel
Strand 5
C
134 135anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 129first strand
Strand 2
C
31 40anti-parallel
Strand 3
C
350 353anti-parallel
Strand 4
C
327 330parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 222first strand
Strand 2
C
198 203parallel
Strand 3
C
175 179parallel
Strand 4
C
250 253parallel
Strand 5
C
273 276parallel
Strand 6
C
297 300parallel
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