Analysis of interatomic Contacts of Structural Units in PDB entry:
7QVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QVD entry

There is 1 chain in PDB entry 7QVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 19PRO 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7QVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 23Right-handed 310
Helix 2
AA2
A
24 39Right-handed alpha
Helix 3
AA3
A
42 51Right-handed alpha
Helix 4
AA4
A
56 63Right-handed 310
Helix 5
AA5
A
72 81Right-handed alpha
Helix 6
AA6
A
82 96Right-handed alpha
Helix 7
AA7
A
96 108Right-handed alpha
Helix 8
AA8
A
110 123Right-handed alpha
Helix 9
AA9
A
133 143Right-handed alpha
Helix 10
AB1
A
146 163Right-handed alpha
Helix 11
AB2
A
185 193Right-handed alpha
Helix 12
AB3
A
207 222Right-handed alpha
Helix 13
AB4
A
241 245Right-handed 310
Helix 14
AB5
A
253 259Right-handed alpha
Helix 15
AB6
A
292 301Right-handed alpha
Helix 16
AB7
A
304 319Right-handed alpha
Helix 17
AB8
A
336 350Right-handed alpha
Helix 18
AB9
A
362 377Right-handed alpha
Helix 19
AC1
A
386 394Right-handed alpha
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There are 2 sheets in PDB entry 7QVD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
172 173anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
275 279anti-parallel
Strand 3
A
288 291anti-parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
262 263anti-parallel
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