Analysis of interatomic Contacts of Structural Units in PDB entry:
7QW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QW5 entry

There are 3 chains in PDB entry 7QW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10SER 576
Z
 C 1 C 10
Y
 G 11 G 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7QW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
22 37Right-handed alpha
Helix 3
AA3
A
55 67Right-handed alpha
Helix 4
AA4
A
80 94Right-handed alpha
Helix 5
AA5
A
138 155Right-handed alpha
Helix 6
AA6
A
161 172Right-handed alpha
Helix 7
AA7
A
187 190Right-handed 310
Helix 8
AA8
A
191 193Right-handed 310
Helix 9
AA9
A
194 204Right-handed alpha
Helix 10
AB1
A
268 275Right-handed 310
Helix 11
AB2
A
309 322Right-handed alpha
Helix 12
AB3
A
327 330Right-handed alpha
Helix 13
AB4
A
341 345Right-handed alpha
Helix 14
AB5
A
369 373Right-handed 310
Helix 15
AB6
A
402 405Right-handed 310
Helix 16
AB7
A
406 416Right-handed alpha
Helix 17
AB8
A
416 422Right-handed alpha
Helix 18
AB9
A
423 429Right-handed alpha
Helix 19
AC1
A
486 496Right-handed alpha
Helix 20
AC2
A
497 508Right-handed alpha
Helix 21
AC3
A
512 516Right-handed 310
Helix 22
AC4
A
520 525Right-handed alpha
Helix 23
AC5
A
534 550Right-handed alpha
Helix 24
AC6
A
556 573Right-handed alpha
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There are 6 sheets in PDB entry 7QW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
72 77parallel
Strand 3
A
45 49parallel
Strand 4
A
127 132parallel
Strand 5
A
174 185parallel
Strand 6
A
225 232anti-parallel
Strand 7
A
205 212anti-parallel
Strand 8
A
246 252parallel
Strand 9
A
288 294anti-parallel
Strand 10
A
279 281anti-parallel
Strand 11
A
262 263parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
528 529anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
474 479anti-parallel
Strand 3
A
449 453anti-parallel
Strand 4
A
462 464anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
386 388anti-parallel
Strand 3
A
364 368anti-parallel
Strand 4
A
469 470parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
398 400anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
517 518anti-parallel
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