Analysis of interatomic Contacts of Structural Units in PDB entry:
7QW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QW6 entry

There are 4 chains in PDB entry 7QW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9SER 576
Z
 C 1 C 10
Y
 G 11 G 16
Y
 T 18 G 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7QW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
22 37Right-handed alpha
Helix 3
AA3
A
55 68Right-handed alpha
Helix 4
AA4
A
80 94Right-handed alpha
Helix 5
AA5
A
138 143Right-handed alpha
Helix 6
AA6
A
143 155Right-handed alpha
Helix 7
AA7
A
161 172Right-handed alpha
Helix 8
AA8
A
187 190Right-handed 310
Helix 9
AA9
A
191 193Right-handed 310
Helix 10
AB1
A
194 204Right-handed alpha
Helix 11
AB2
A
268 273Right-handed alpha
Helix 12
AB3
A
309 322Right-handed alpha
Helix 13
AB4
A
327 330Right-handed alpha
Helix 14
AB5
A
341 345Right-handed alpha
Helix 15
AB6
A
349 353Right-handed 310
Helix 16
AB7
A
354 358Right-handed 310
Helix 17
AB8
A
369 373Right-handed 310
Helix 18
AB9
A
379 383Right-handed 310
Helix 19
AC1
A
402 405Right-handed 310
Helix 20
AC2
A
406 416Right-handed alpha
Helix 21
AC3
A
416 421Right-handed alpha
Helix 22
AC4
A
423 429Right-handed alpha
Helix 23
AC5
A
443 447Right-handed 310
Helix 24
AC6
A
485 496Right-handed alpha
Helix 25
AC7
A
497 508Right-handed alpha
Helix 26
AC8
A
512 516Right-handed 310
Helix 27
AC9
A
520 525Right-handed alpha
Helix 28
AD1
A
534 550Right-handed alpha
Helix 29
AD2
A
556 573Right-handed alpha
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There are 6 sheets in PDB entry 7QW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
72 78parallel
Strand 3
A
45 49parallel
Strand 4
A
127 132parallel
Strand 5
A
174 185parallel
Strand 6
A
225 232anti-parallel
Strand 7
A
205 212anti-parallel
Strand 8
A
246 252parallel
Strand 9
A
286 294anti-parallel
Strand 10
A
279 283anti-parallel
Strand 11
A
262 263parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
528 529anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
474 479anti-parallel
Strand 3
A
449 453anti-parallel
Strand 4
A
462 464anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
386 388anti-parallel
Strand 3
A
364 368anti-parallel
Strand 4
A
469 470parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
398 400anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
517 518anti-parallel
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