Analysis of interatomic Contacts of Structural Units in PDB entry:
7QW8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QW8 entry

There are 2 chains in PDB entry 7QW8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	LYS 578
B	PHE 20	SER 576

There are 54 helices in PDB entry 7QW8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	37	Right-handed alpha
Helix 2	AA2	A	55	68	Right-handed alpha
Helix 3	AA3	A	80	94	Right-handed alpha
Helix 4	AA4	A	105	110	Right-handed alpha
Helix 5	AA5	A	143	154	Right-handed alpha
Helix 6	AA6	A	162	173	Right-handed alpha
Helix 7	AA7	A	187	190	Right-handed 310
Helix 8	AA8	A	191	193	Right-handed 310
Helix 9	AA9	A	194	204	Right-handed alpha
Helix 10	AB1	A	269	275	Right-handed 310
Helix 11	AB2	A	310	323	Right-handed alpha
Helix 12	AB3	A	327	330	Right-handed alpha
Helix 13	AB4	A	341	345	Right-handed alpha
Helix 14	AB5	A	349	353	Right-handed 310
Helix 15	AB6	A	354	358	Right-handed 310
Helix 16	AB7	A	360	362	Right-handed 310
Helix 17	AB8	A	369	373	Right-handed 310
Helix 18	AB9	A	402	405	Right-handed 310
Helix 19	AC1	A	406	415	Right-handed alpha
Helix 20	AC2	A	416	422	Right-handed alpha
Helix 21	AC3	A	423	429	Right-handed alpha
Helix 22	AC4	A	441	445	Right-handed 310
Helix 23	AC5	A	485	496	Right-handed alpha
Helix 24	AC6	A	497	508	Right-handed alpha
Helix 25	AC7	A	520	525	Right-handed alpha
Helix 26	AC8	A	534	550	Right-handed alpha
Helix 27	AC9	A	553	573	Right-handed alpha
Helix 28	AD1	B	22	37	Right-handed alpha
Helix 29	AD2	B	55	68	Right-handed alpha
Helix 30	AD3	B	80	94	Right-handed alpha
Helix 31	AD4	B	105	111	Right-handed alpha
Helix 32	AD5	B	143	155	Right-handed alpha
Helix 33	AD6	B	161	173	Right-handed alpha
Helix 34	AD7	B	187	190	Right-handed 310
Helix 35	AD8	B	191	193	Right-handed 310
Helix 36	AD9	B	194	204	Right-handed alpha
Helix 37	AE1	B	269	275	Right-handed 310
Helix 38	AE2	B	310	323	Right-handed alpha
Helix 39	AE3	B	327	330	Right-handed alpha
Helix 40	AE4	B	341	345	Right-handed alpha
Helix 41	AE5	B	349	353	Right-handed 310
Helix 42	AE6	B	354	358	Right-handed 310
Helix 43	AE7	B	360	362	Right-handed 310
Helix 44	AE8	B	369	373	Right-handed 310
Helix 45	AE9	B	402	405	Right-handed 310
Helix 46	AF1	B	406	415	Right-handed alpha
Helix 47	AF2	B	416	422	Right-handed alpha
Helix 48	AF3	B	423	429	Right-handed alpha
Helix 49	AF4	B	441	445	Right-handed 310
Helix 50	AF5	B	485	496	Right-handed alpha
Helix 51	AF6	B	497	508	Right-handed alpha
Helix 52	AF7	B	520	525	Right-handed alpha
Helix 53	AF8	B	534	550	Right-handed alpha
Helix 54	AF9	B	553	573	Right-handed alpha

There are 14 sheets in PDB entry 7QW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	103	first strand
Strand 2	A	71	78	parallel
Strand 3	A	44	49	parallel
Strand 4	A	127	132	parallel
Strand 5	A	174	185	parallel
Strand 6	A	225	232	anti-parallel
Strand 7	A	205	212	anti-parallel
Strand 8	A	246	253	parallel
Strand 9	A	287	294	anti-parallel
Strand 10	A	279	282	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	103	first strand
Strand 2	A	71	78	parallel
Strand 3	A	44	49	parallel
Strand 4	A	127	132	parallel
Strand 5	A	174	185	parallel
Strand 6	A	225	232	anti-parallel
Strand 7	A	205	212	anti-parallel
Strand 8	A	246	253	parallel
Strand 9	A	287	294	anti-parallel
Strand 10	A	308	309	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	326	first strand
Strand 2	A	528	529	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	335	first strand
Strand 2	A	474	479	anti-parallel
Strand 3	A	449	453	anti-parallel
Strand 4	A	462	464	anti-parallel
Strand 5	A	376	377	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	386	388	anti-parallel
Strand 3	A	364	368	anti-parallel
Strand 4	A	469	470	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	394	first strand
Strand 2	A	397	400	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	517	518	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	103	first strand
Strand 2	B	72	78	parallel
Strand 3	B	45	49	parallel
Strand 4	B	127	132	parallel
Strand 5	B	174	185	parallel
Strand 6	B	225	232	anti-parallel
Strand 7	B	205	212	anti-parallel
Strand 8	B	246	253	parallel
Strand 9	B	286	294	anti-parallel
Strand 10	B	279	283	anti-parallel
Strand 11	B	262	263	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	103	first strand
Strand 2	B	72	78	parallel
Strand 3	B	45	49	parallel
Strand 4	B	127	132	parallel
Strand 5	B	174	185	parallel
Strand 6	B	225	232	anti-parallel
Strand 7	B	205	212	anti-parallel
Strand 8	B	246	253	parallel
Strand 9	B	286	294	anti-parallel
Strand 10	B	308	309	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	528	529	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	335	first strand
Strand 2	B	474	479	anti-parallel
Strand 3	B	449	453	anti-parallel
Strand 4	B	462	464	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	386	388	anti-parallel
Strand 3	B	364	368	anti-parallel
Strand 4	B	469	470	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	394	first strand
Strand 2	B	397	400	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	517	518	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QW8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QW8