Analysis of interatomic Contacts of Structural Units in PDB entry:
7QWK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QWK entry

There are 8 chains in PDB entry 7QWK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 583	SER 998
B	PHE 583	SER 998
C	PHE 583	PRO 1004
D	PHE 583	PRO 1003
E	SER 584	PRO 1004
F	SER 584	GLN 1005
G	SER 584	GLU 1007
H	SER 584	MET 1006

There are 92 helices in PDB entry 7QWK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	584	589	Right-handed alpha
Helix 2	AA2	A	627	641	Right-handed alpha
Helix 3	AA3	A	809	816	Right-handed alpha
Helix 4	AA4	A	817	820	Right-handed 310
Helix 5	AA5	A	821	842	Right-handed alpha
Helix 6	AA6	A	904	908	Right-handed 310
Helix 7	AA7	A	922	938	Right-handed alpha
Helix 8	AA8	A	943	953	Right-handed alpha
Helix 9	AA9	A	971	982	Right-handed alpha
Helix 10	AB1	A	985	989	Right-handed 310
Helix 11	AB2	A	991	997	Right-handed alpha
Helix 12	AB3	B	584	589	Right-handed alpha
Helix 13	AB4	B	627	641	Right-handed alpha
Helix 14	AB5	B	809	815	Right-handed alpha
Helix 15	AB6	B	816	820	Right-handed 310
Helix 16	AB7	B	821	842	Right-handed alpha
Helix 17	AB8	B	850	852	Right-handed 310
Helix 18	AB9	B	909	913	Right-handed 310
Helix 19	AC1	B	922	938	Right-handed alpha
Helix 20	AC2	B	943	954	Right-handed alpha
Helix 21	AC3	B	971	983	Right-handed alpha
Helix 22	AC4	B	985	989	Right-handed 310
Helix 23	AC5	B	991	998	Right-handed alpha
Helix 24	AC6	C	584	589	Right-handed alpha
Helix 25	AC7	C	627	641	Right-handed alpha
Helix 26	AC8	C	809	816	Right-handed alpha
Helix 27	AC9	C	817	820	Right-handed 310
Helix 28	AD1	C	821	842	Right-handed alpha
Helix 29	AD2	C	850	852	Right-handed 310
Helix 30	AD3	C	909	913	Right-handed 310
Helix 31	AD4	C	923	938	Right-handed alpha
Helix 32	AD5	C	943	953	Right-handed alpha
Helix 33	AD6	C	971	982	Right-handed alpha
Helix 34	AD7	C	985	989	Right-handed 310
Helix 35	AD8	C	991	997	Right-handed alpha
Helix 36	AD9	D	584	589	Right-handed alpha
Helix 37	AE1	D	627	641	Right-handed alpha
Helix 38	AE2	D	809	816	Right-handed alpha
Helix 39	AE3	D	817	820	Right-handed 310
Helix 40	AE4	D	821	842	Right-handed alpha
Helix 41	AE5	D	903	907	Right-handed 310
Helix 42	AE6	D	909	913	Right-handed 310
Helix 43	AE7	D	922	938	Right-handed alpha
Helix 44	AE8	D	943	955	Right-handed alpha
Helix 45	AE9	D	971	982	Right-handed alpha
Helix 46	AF1	D	985	989	Right-handed 310
Helix 47	AF2	D	991	998	Right-handed alpha
Helix 48	AF3	E	585	589	Right-handed alpha
Helix 49	AF4	E	629	641	Right-handed alpha
Helix 50	AF5	E	809	816	Right-handed alpha
Helix 51	AF6	E	817	820	Right-handed 310
Helix 52	AF7	E	821	842	Right-handed alpha
Helix 53	AF8	E	850	852	Right-handed 310
Helix 54	AF9	E	922	938	Right-handed alpha
Helix 55	AG1	E	943	956	Right-handed alpha
Helix 56	AG2	E	967	982	Right-handed alpha
Helix 57	AG3	E	985	989	Right-handed 310
Helix 58	AG4	E	991	997	Right-handed alpha
Helix 59	AG5	F	585	589	Right-handed alpha
Helix 60	AG6	F	627	642	Right-handed alpha
Helix 61	AG7	F	809	816	Right-handed alpha
Helix 62	AG8	F	817	820	Right-handed 310
Helix 63	AG9	F	821	842	Right-handed alpha
Helix 64	AH1	F	850	852	Right-handed 310
Helix 65	AH2	F	899	904	Right-handed alpha
Helix 66	AH3	F	905	908	Right-handed 310
Helix 67	AH4	F	923	937	Right-handed alpha
Helix 68	AH5	F	943	955	Right-handed alpha
Helix 69	AH6	F	971	982	Right-handed alpha
Helix 70	AH7	F	985	989	Right-handed 310
Helix 71	AH8	F	991	997	Right-handed alpha
Helix 72	AH9	G	585	589	Right-handed alpha
Helix 73	AI1	G	629	641	Right-handed alpha
Helix 74	AI2	G	809	818	Right-handed alpha
Helix 75	AI3	G	821	842	Right-handed alpha
Helix 76	AI4	G	850	852	Right-handed 310
Helix 77	AI5	G	922	938	Right-handed alpha
Helix 78	AI6	G	943	956	Right-handed alpha
Helix 79	AI7	G	971	982	Right-handed alpha
Helix 80	AI8	G	985	989	Right-handed 310
Helix 81	AI9	G	991	997	Right-handed alpha
Helix 82	AJ1	H	585	589	Right-handed alpha
Helix 83	AJ2	H	627	642	Right-handed alpha
Helix 84	AJ3	H	809	816	Right-handed alpha
Helix 85	AJ4	H	817	820	Right-handed 310
Helix 86	AJ5	H	821	842	Right-handed alpha
Helix 87	AJ6	H	850	852	Right-handed 310
Helix 88	AJ7	H	899	906	Right-handed alpha
Helix 89	AJ8	H	922	938	Right-handed alpha
Helix 90	AJ9	H	943	955	Right-handed alpha
Helix 91	AK1	H	972	983	Right-handed alpha
Helix 92	AK2	H	991	997	Right-handed alpha

There are 18 sheets in PDB entry 7QWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	599	first strand
Strand 2	A	602	609	anti-parallel
Strand 3	A	615	623	anti-parallel
Strand 4	A	796	803	anti-parallel
Strand 5	A	651	657	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	862	864	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	599	first strand
Strand 2	B	602	609	anti-parallel
Strand 3	B	615	623	anti-parallel
Strand 4	B	796	803	anti-parallel
Strand 5	B	651	657	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	854	856	first strand
Strand 2	B	862	864	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	599	first strand
Strand 2	C	602	609	anti-parallel
Strand 3	C	615	623	anti-parallel
Strand 4	C	796	803	anti-parallel
Strand 5	C	651	657	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	854	856	first strand
Strand 2	C	862	864	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	598	first strand
Strand 2	D	603	609	anti-parallel
Strand 3	D	615	623	anti-parallel
Strand 4	D	796	803	anti-parallel
Strand 5	D	651	657	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	854	856	first strand
Strand 2	D	862	864	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	590	598	first strand
Strand 2	E	603	609	anti-parallel
Strand 3	E	615	623	anti-parallel
Strand 4	E	796	803	anti-parallel
Strand 5	E	651	657	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	854	856	first strand
Strand 2	E	862	864	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	590	599	first strand
Strand 2	F	602	609	anti-parallel
Strand 3	F	615	623	anti-parallel
Strand 4	F	796	803	anti-parallel
Strand 5	F	651	657	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	854	856	first strand
Strand 2	F	862	864	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	590	599	first strand
Strand 2	G	602	609	anti-parallel
Strand 3	G	615	623	anti-parallel
Strand 4	G	796	803	anti-parallel
Strand 5	G	651	657	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	844	845	first strand
Strand 2	G	873	874	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	854	856	first strand
Strand 2	G	862	864	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	590	599	first strand
Strand 2	H	602	609	anti-parallel
Strand 3	H	615	623	anti-parallel
Strand 4	H	796	803	anti-parallel
Strand 5	H	651	657	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	844	845	first strand
Strand 2	H	870	871	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	854	856	first strand
Strand 2	H	862	864	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QWK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QWK