Analysis of interatomic Contacts of Structural Units in PDB entry:
7QXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QXR entry

There are 3 chains in PDB entry 7QXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11THR 305
B
 ALA 12LEU 304
C
 THR 11LEU 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 7QXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 20Right-handed alpha
Helix 2
AA2
A
54 59Right-handed 310
Helix 3
AA3
A
61 69Right-handed 310
Helix 4
AA4
A
91 104Right-handed alpha
Helix 5
AA5
A
118 131Right-handed alpha
Helix 6
AA6
A
150 154Right-handed 310
Helix 7
AA7
A
157 166Right-handed alpha
Helix 8
AA8
A
167 174Right-handed alpha
Helix 9
AA9
A
177 182Right-handed alpha
Helix 10
AB1
A
182 187Right-handed alpha
Helix 11
AB2
A
193 202Right-handed alpha
Helix 12
AB3
A
203 205Right-handed 310
Helix 13
AB4
A
208 210Right-handed 310
Helix 14
AB5
A
211 220Right-handed alpha
Helix 15
AB6
A
228 243Right-handed alpha
Helix 16
AB7
A
260 268Right-handed alpha
Helix 17
AB8
A
284 288Right-handed 310
Helix 18
AB9
A
289 304Right-handed alpha
Helix 19
AC1
B
13 20Right-handed alpha
Helix 20
AC2
B
54 59Right-handed 310
Helix 21
AC3
B
61 65Right-handed 310
Helix 22
AC4
B
91 104Right-handed alpha
Helix 23
AC5
B
118 130Right-handed alpha
Helix 24
AC6
B
131 133Right-handed 310
Helix 25
AC7
B
150 154Right-handed 310
Helix 26
AC8
B
157 166Right-handed alpha
Helix 27
AC9
B
166 175Right-handed alpha
Helix 28
AD1
B
177 182Right-handed alpha
Helix 29
AD2
B
182 187Right-handed alpha
Helix 30
AD3
B
193 202Right-handed alpha
Helix 31
AD4
B
203 205Right-handed 310
Helix 32
AD5
B
208 210Right-handed 310
Helix 33
AD6
B
211 220Right-handed alpha
Helix 34
AD7
B
228 244Right-handed alpha
Helix 35
AD8
B
260 268Right-handed alpha
Helix 36
AD9
B
284 288Right-handed 310
Helix 37
AE1
B
289 303Right-handed alpha
Helix 38
AE2
C
13 19Right-handed alpha
Helix 39
AE3
C
54 59Right-handed 310
Helix 40
AE4
C
61 69Right-handed 310
Helix 41
AE5
C
91 104Right-handed alpha
Helix 42
AE6
C
118 131Right-handed alpha
Helix 43
AE7
C
150 154Right-handed 310
Helix 44
AE8
C
157 166Right-handed alpha
Helix 45
AE9
C
166 175Right-handed alpha
Helix 46
AF1
C
177 182Right-handed alpha
Helix 47
AF2
C
182 187Right-handed alpha
Helix 48
AF3
C
193 202Right-handed alpha
Helix 49
AF4
C
203 205Right-handed 310
Helix 50
AF5
C
208 210Right-handed 310
Helix 51
AF6
C
211 220Right-handed alpha
Helix 52
AF7
C
228 244Right-handed alpha
Helix 53
AF8
C
260 268Right-handed alpha
Helix 54
AF9
C
284 288Right-handed 310
Helix 55
AG1
C
289 303Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7QXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
70 74anti-parallel
Strand 4
A
44 48parallel
Strand 5
A
112 117parallel
Strand 6
A
135 141parallel
Strand 7
A
250 257parallel
Strand 8
A
274 281parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
70 74anti-parallel
Strand 4
B
44 48parallel
Strand 5
B
112 117parallel
Strand 6
B
135 141parallel
Strand 7
B
250 257parallel
Strand 8
B
274 281parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
29 35anti-parallel
Strand 3
C
70 74anti-parallel
Strand 4
C
44 48parallel
Strand 5
C
112 117parallel
Strand 6
C
135 141parallel
Strand 7
C
250 257parallel
Strand 8
C
274 281parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il