Analysis of interatomic Contacts of Structural Units in PDB entry:
7QY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QY5 entry

There are 6 chains in PDB entry 7QY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 69	ALA 182
C	ILE 70	ALA 182
F	GLU 32	SER 37
G	LYS 31	SER 37
B	GLN 207	SER 530
D	GLN 207	SER 530

There are 42 helices in PDB entry 7QY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	75	Right-handed 310
Helix 2	AA2	A	80	92	Right-handed alpha
Helix 3	AA3	A	105	129	Right-handed alpha
Helix 4	AA4	A	131	139	Right-handed alpha
Helix 5	AA5	A	141	145	Right-handed 310
Helix 6	AA6	A	151	171	Right-handed alpha
Helix 7	AA7	C	80	92	Right-handed alpha
Helix 8	AA8	C	100	105	Right-handed alpha
Helix 9	AA9	C	105	129	Right-handed alpha
Helix 10	AB1	C	131	139	Right-handed alpha
Helix 11	AB2	C	151	171	Right-handed alpha
Helix 12	AB3	B	209	221	Right-handed alpha
Helix 13	AB4	B	234	244	Right-handed alpha
Helix 14	AB5	B	277	284	Right-handed alpha
Helix 15	AB6	B	311	315	Right-handed 310
Helix 16	AB7	B	316	338	Right-handed alpha
Helix 17	AB8	B	343	355	Right-handed alpha
Helix 18	AB9	B	367	384	Right-handed alpha
Helix 19	AC1	B	397	402	Right-handed alpha
Helix 20	AC2	B	421	440	Right-handed alpha
Helix 21	AC3	B	441	444	Right-handed 310
Helix 22	AC4	B	446	450	Right-handed 310
Helix 23	AC5	B	453	465	Right-handed alpha
Helix 24	AC6	B	487	498	Right-handed alpha
Helix 25	AC7	B	499	518	Right-handed alpha
Helix 26	AC8	B	525	529	Right-handed 310
Helix 27	AC9	D	209	221	Right-handed alpha
Helix 28	AD1	D	234	244	Right-handed alpha
Helix 29	AD2	D	275	284	Right-handed alpha
Helix 30	AD3	D	311	315	Right-handed 310
Helix 31	AD4	D	316	338	Right-handed alpha
Helix 32	AD5	D	343	355	Right-handed alpha
Helix 33	AD6	D	367	384	Right-handed alpha
Helix 34	AD7	D	397	403	Right-handed alpha
Helix 35	AD8	D	416	420	Right-handed 310
Helix 36	AD9	D	423	440	Right-handed alpha
Helix 37	AE1	D	441	444	Right-handed 310
Helix 38	AE2	D	446	450	Right-handed 310
Helix 39	AE3	D	453	465	Right-handed alpha
Helix 40	AE4	D	487	498	Right-handed alpha
Helix 41	AE5	D	499	518	Right-handed alpha
Helix 42	AE6	D	525	529	Right-handed 310

There are 9 sheets in PDB entry 7QY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	229	first strand
Strand 2	B	264	270	anti-parallel
Strand 3	B	248	253	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	289	first strand
Strand 2	B	292	293	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	310	first strand
Strand 2	B	409	411	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	393	394	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	468	first strand
Strand 2	B	474	476	anti-parallel
Strand 3	B	484	485	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	253	first strand
Strand 2	D	264	270	anti-parallel
Strand 3	D	223	229	anti-parallel
Strand 4	D	296	297	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	289	first strand
Strand 2	D	292	293	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	310	first strand
Strand 2	D	409	411	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	466	470	first strand
Strand 2	D	473	476	anti-parallel
Strand 3	D	484	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QY5