Analysis of interatomic Contacts of Structural Units in PDB entry:
7QY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QY9 entry

There are 2 chains in PDB entry 7QY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 34	ARG 552
B	ASP 34	VAL 156

There are 18 helices in PDB entry 7QY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	82	Right-handed 310
Helix 2	AA2	A	204	208	Right-handed 310
Helix 3	AA3	A	267	271	Right-handed 310
Helix 4	AA4	A	272	276	Right-handed 310
Helix 5	AA5	A	306	311	Right-handed alpha
Helix 6	AA6	A	341	346	Right-handed alpha
Helix 7	AA7	A	465	469	Right-handed 310
Helix 8	AA8	A	503	505	Right-handed 310
Helix 9	AA9	A	547	551	Right-handed alpha
Helix 10	AB1	B	80	82	Right-handed 310
Helix 11	AB2	B	204	208	Right-handed 310
Helix 12	AB3	B	267	271	Right-handed 310
Helix 13	AB4	B	272	276	Right-handed 310
Helix 14	AB5	B	306	311	Right-handed alpha
Helix 15	AB6	B	341	346	Right-handed alpha
Helix 16	AB7	B	465	469	Right-handed 310
Helix 17	AB8	B	503	505	Right-handed 310
Helix 18	AB9	B	547	551	Right-handed alpha

There are 20 sheets in PDB entry 7QY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	132	first strand
Strand 2	A	84	93	anti-parallel
Strand 3	A	150	160	anti-parallel
Strand 4	A	53	62	anti-parallel
Strand 5	A	35	39	anti-parallel
Strand 6	A	185	187	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	193	201	parallel
Strand 3	A	169	179	anti-parallel
Strand 4	A	182	183	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	68	75	anti-parallel
Strand 3	A	169	179	anti-parallel
Strand 4	A	193	201	anti-parallel
Strand 5	A	540	546	anti-parallel
Strand 6	A	528	533	anti-parallel
Strand 7	A	519	523	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	218	first strand
Strand 2	A	224	231	anti-parallel
Strand 3	A	242	249	anti-parallel
Strand 4	A	260	263	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	322	328	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	278	285	anti-parallel
Strand 5	A	358	359	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	368	375	anti-parallel
Strand 3	A	381	388	anti-parallel
Strand 4	A	396	397	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	368	375	anti-parallel
Strand 3	A	381	388	anti-parallel
Strand 4	A	402	403	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	414	first strand
Strand 2	A	417	424	anti-parallel
Strand 3	A	431	435	anti-parallel
Strand 4	A	443	444	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	453	454	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	464	first strand
Strand 2	A	475	481	anti-parallel
Strand 3	A	490	495	anti-parallel
Strand 4	A	507	511	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	132	first strand
Strand 2	B	84	93	anti-parallel
Strand 3	B	150	160	anti-parallel
Strand 4	B	53	62	anti-parallel
Strand 5	B	35	39	anti-parallel
Strand 6	B	185	187	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	193	201	parallel
Strand 3	B	169	179	anti-parallel
Strand 4	B	182	183	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	68	75	anti-parallel
Strand 3	B	169	179	anti-parallel
Strand 4	B	193	201	anti-parallel
Strand 5	B	540	546	anti-parallel
Strand 6	B	528	533	anti-parallel
Strand 7	B	519	523	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	218	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	242	249	anti-parallel
Strand 4	B	260	263	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	322	328	anti-parallel
Strand 3	B	292	298	anti-parallel
Strand 4	B	278	285	anti-parallel
Strand 5	B	358	359	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	368	375	anti-parallel
Strand 3	B	381	388	anti-parallel
Strand 4	B	396	397	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	368	375	anti-parallel
Strand 3	B	381	388	anti-parallel
Strand 4	B	402	403	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	414	first strand
Strand 2	B	417	424	anti-parallel
Strand 3	B	431	435	anti-parallel
Strand 4	B	443	444	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	429	first strand
Strand 2	B	453	454	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	464	first strand
Strand 2	B	475	481	anti-parallel
Strand 3	B	490	495	anti-parallel
Strand 4	B	507	511	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QY9