Analysis of interatomic Contacts of Structural Units in PDB entry:
7QYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QYF entry

There are 4 chains in PDB entry 7QYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 38	GLY 455
B	ILE 36	GLU 459
C	ILE 36	GLY 456
D	ILE 36	GLU 459

There are 65 helices in PDB entry 7QYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	62	Right-handed alpha
Helix 2	AA2	A	69	82	Right-handed alpha
Helix 3	AA3	A	95	108	Right-handed alpha
Helix 4	AA4	A	120	138	Right-handed alpha
Helix 5	AA5	A	158	165	Right-handed alpha
Helix 6	AA6	A	167	172	Right-handed alpha
Helix 7	AA7	A	197	217	Right-handed alpha
Helix 8	AA8	A	241	253	Right-handed alpha
Helix 9	AA9	A	273	278	Right-handed alpha
Helix 10	AB1	A	305	314	Right-handed alpha
Helix 11	AB2	A	327	344	Right-handed alpha
Helix 12	AB3	A	347	353	Right-handed alpha
Helix 13	AB4	A	353	364	Right-handed alpha
Helix 14	AB5	A	397	413	Right-handed alpha
Helix 15	AB6	A	432	455	Right-handed alpha
Helix 16	AB7	B	69	83	Right-handed alpha
Helix 17	AB8	B	95	108	Right-handed alpha
Helix 18	AB9	B	120	139	Right-handed alpha
Helix 19	AC1	B	158	165	Right-handed alpha
Helix 20	AC2	B	168	173	Right-handed alpha
Helix 21	AC3	B	197	217	Right-handed alpha
Helix 22	AC4	B	241	253	Right-handed alpha
Helix 23	AC5	B	273	278	Right-handed alpha
Helix 24	AC6	B	288	292	Right-handed 310
Helix 25	AC7	B	305	313	Right-handed alpha
Helix 26	AC8	B	327	344	Right-handed alpha
Helix 27	AC9	B	345	350	Right-handed alpha
Helix 28	AD1	B	353	365	Right-handed alpha
Helix 29	AD2	B	366	368	Right-handed 310
Helix 30	AD3	B	397	412	Right-handed alpha
Helix 31	AD4	B	432	453	Right-handed alpha
Helix 32	AD5	C	57	62	Right-handed alpha
Helix 33	AD6	C	69	83	Right-handed alpha
Helix 34	AD7	C	95	108	Right-handed alpha
Helix 35	AD8	C	120	138	Right-handed alpha
Helix 36	AD9	C	158	165	Right-handed alpha
Helix 37	AE1	C	188	193	Right-handed alpha
Helix 38	AE2	C	197	217	Right-handed alpha
Helix 39	AE3	C	241	253	Right-handed alpha
Helix 40	AE4	C	260	265	Right-handed alpha
Helix 41	AE5	C	273	278	Right-handed alpha
Helix 42	AE6	C	288	293	Right-handed 310
Helix 43	AE7	C	305	313	Right-handed alpha
Helix 44	AE8	C	327	344	Right-handed alpha
Helix 45	AE9	C	345	353	Right-handed alpha
Helix 46	AF1	C	353	365	Right-handed alpha
Helix 47	AF2	C	366	368	Right-handed 310
Helix 48	AF3	C	397	412	Right-handed alpha
Helix 49	AF4	C	432	456	Right-handed alpha
Helix 50	AF5	D	57	62	Right-handed alpha
Helix 51	AF6	D	69	83	Right-handed alpha
Helix 52	AF7	D	96	108	Right-handed alpha
Helix 53	AF8	D	120	138	Right-handed alpha
Helix 54	AF9	D	158	165	Right-handed alpha
Helix 55	AG1	D	167	173	Right-handed alpha
Helix 56	AG2	D	197	217	Right-handed alpha
Helix 57	AG3	D	241	253	Right-handed alpha
Helix 58	AG4	D	273	278	Right-handed alpha
Helix 59	AG5	D	305	314	Right-handed alpha
Helix 60	AG6	D	327	344	Right-handed alpha
Helix 61	AG7	D	347	353	Right-handed alpha
Helix 62	AG8	D	353	364	Right-handed alpha
Helix 63	AG9	D	365	368	Right-handed 310
Helix 64	AH1	D	397	412	Right-handed alpha
Helix 65	AH2	D	432	454	Right-handed alpha

There are 16 sheets in PDB entry 7QYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	44	46	anti-parallel
Strand 3	A	53	54	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	118	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	284	287	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	146	150	parallel
Strand 3	A	221	226	parallel
Strand 4	A	256	259	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	377	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	422	425	anti-parallel
Strand 4	A	417	418	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	44	46	anti-parallel
Strand 3	B	52	55	anti-parallel
Strand 4	B	414	415	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	118	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	284	287	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	184	first strand
Strand 2	B	146	150	parallel
Strand 3	B	221	226	parallel
Strand 4	B	256	259	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	377	first strand
Strand 2	B	380	385	anti-parallel
Strand 3	B	422	425	anti-parallel
Strand 4	B	417	418	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	44	45	anti-parallel
Strand 3	C	53	54	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	118	first strand
Strand 2	C	299	304	anti-parallel
Strand 3	C	284	287	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	146	150	parallel
Strand 3	C	221	226	parallel
Strand 4	C	256	259	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	377	first strand
Strand 2	C	380	385	anti-parallel
Strand 3	C	422	425	anti-parallel
Strand 4	C	417	419	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	414	415	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	118	first strand
Strand 2	D	299	304	anti-parallel
Strand 3	D	284	287	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	184	first strand
Strand 2	D	146	150	parallel
Strand 3	D	221	226	parallel
Strand 4	D	256	259	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	377	first strand
Strand 2	D	380	385	anti-parallel
Strand 3	D	422	425	anti-parallel
Strand 4	D	417	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QYF