Analysis of interatomic Contacts of Structural Units in PDB entry:
7QYG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QYG entry

There are 4 chains in PDB entry 7QYG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 70	GLU 459
B	GLU 71	GLU 459
C	ARG 69	GLU 459
D	GLU 71	GLU 459

There are 55 helices in PDB entry 7QYG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	120	137	Right-handed alpha
Helix 2	AA2	A	158	165	Right-handed alpha
Helix 3	AA3	A	197	215	Right-handed alpha
Helix 4	AA4	A	230	234	Right-handed 310
Helix 5	AA5	A	241	253	Right-handed alpha
Helix 6	AA6	A	274	279	Right-handed alpha
Helix 7	AA7	A	305	313	Right-handed alpha
Helix 8	AA8	A	328	331	Right-handed 310
Helix 9	AA9	A	333	338	Right-handed alpha
Helix 10	AB1	A	338	343	Right-handed alpha
Helix 11	AB2	A	345	353	Right-handed alpha
Helix 12	AB3	A	353	363	Right-handed alpha
Helix 13	AB4	A	402	411	Right-handed alpha
Helix 14	AB5	A	433	454	Right-handed alpha
Helix 15	AB6	B	120	140	Right-handed alpha
Helix 16	AB7	B	158	165	Right-handed alpha
Helix 17	AB8	B	197	208	Right-handed alpha
Helix 18	AB9	B	209	217	Right-handed alpha
Helix 19	AC1	B	243	253	Right-handed alpha
Helix 20	AC2	B	274	279	Right-handed alpha
Helix 21	AC3	B	290	293	Right-handed 310
Helix 22	AC4	B	305	315	Right-handed alpha
Helix 23	AC5	B	320	324	Right-handed 310
Helix 24	AC6	B	327	344	Right-handed alpha
Helix 25	AC7	B	345	353	Right-handed alpha
Helix 26	AC8	B	353	363	Right-handed alpha
Helix 27	AC9	B	402	405	Right-handed 310
Helix 28	AD1	B	406	411	Right-handed alpha
Helix 29	AD2	B	432	453	Right-handed alpha
Helix 30	AD3	C	121	139	Right-handed alpha
Helix 31	AD4	C	158	165	Right-handed alpha
Helix 32	AD5	C	167	172	Right-handed alpha
Helix 33	AD6	C	188	193	Right-handed alpha
Helix 34	AD7	C	197	202	Right-handed alpha
Helix 35	AD8	C	202	215	Right-handed alpha
Helix 36	AD9	C	241	253	Right-handed alpha
Helix 37	AE1	C	273	278	Right-handed alpha
Helix 38	AE2	C	304	312	Right-handed alpha
Helix 39	AE3	C	327	343	Right-handed alpha
Helix 40	AE4	C	345	352	Right-handed alpha
Helix 41	AE5	C	354	362	Right-handed alpha
Helix 42	AE6	C	399	411	Right-handed alpha
Helix 43	AE7	C	433	448	Right-handed alpha
Helix 44	AE8	D	120	139	Right-handed alpha
Helix 45	AE9	D	158	163	Right-handed alpha
Helix 46	AF1	D	188	193	Right-handed alpha
Helix 47	AF2	D	197	214	Right-handed alpha
Helix 48	AF3	D	241	253	Right-handed alpha
Helix 49	AF4	D	273	279	Right-handed alpha
Helix 50	AF5	D	304	314	Right-handed alpha
Helix 51	AF6	D	327	344	Right-handed alpha
Helix 52	AF7	D	345	352	Right-handed alpha
Helix 53	AF8	D	353	363	Right-handed alpha
Helix 54	AF9	D	402	411	Right-handed alpha
Helix 55	AG1	D	432	454	Right-handed alpha

There are 12 sheets in PDB entry 7QYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	118	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	284	288	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	146	150	parallel
Strand 3	A	221	226	parallel
Strand 4	A	258	259	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	381	384	anti-parallel
Strand 3	A	422	425	anti-parallel
Strand 4	A	417	418	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	118	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	284	288	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	146	148	parallel
Strand 3	B	221	225	parallel
Strand 4	B	256	258	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	376	first strand
Strand 2	B	381	385	anti-parallel
Strand 3	B	422	425	anti-parallel
Strand 4	B	417	418	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	299	303	anti-parallel
Strand 3	C	284	286	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	146	150	parallel
Strand 3	C	221	225	parallel
Strand 4	C	256	258	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	380	382	anti-parallel
Strand 3	C	423	425	anti-parallel
Strand 4	C	417	418	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	117	first strand
Strand 2	D	299	303	anti-parallel
Strand 3	D	286	288	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	184	first strand
Strand 2	D	146	150	parallel
Strand 3	D	221	226	parallel
Strand 4	D	257	259	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	376	first strand
Strand 2	D	381	384	anti-parallel
Strand 3	D	422	425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QYG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QYG