Analysis of interatomic Contacts of Structural Units in PDB entry:
7QYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QYR entry

There are 5 chains in PDB entry 7QYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 292
B	MET 1	PRO 292
C	MET 1	ASN 289
D	MET 1	HIS 293
E	MET 1	GLU 178

There are 96 helices in PDB entry 7QYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	33	35	Right-handed 310
Helix 3	AA3	A	66	68	Right-handed 310
Helix 4	AA4	A	69	83	Right-handed alpha
Helix 5	AA5	A	90	99	Right-handed alpha
Helix 6	AA6	A	99	110	Right-handed alpha
Helix 7	AA7	A	125	133	Right-handed alpha
Helix 8	AA8	A	156	168	Right-handed alpha
Helix 9	AA9	A	180	184	Right-handed 310
Helix 10	AB1	A	226	241	Right-handed alpha
Helix 11	AB2	A	267	275	Right-handed alpha
Helix 12	AB3	A	277	291	Right-handed alpha
Helix 13	AB4	B	12	25	Right-handed alpha
Helix 14	AB5	B	33	35	Right-handed 310
Helix 15	AB6	B	66	68	Right-handed 310
Helix 16	AB7	B	69	83	Right-handed alpha
Helix 17	AB8	B	90	99	Right-handed alpha
Helix 18	AB9	B	99	110	Right-handed alpha
Helix 19	AC1	B	125	133	Right-handed alpha
Helix 20	AC2	B	156	169	Right-handed alpha
Helix 21	AC3	B	180	184	Right-handed 310
Helix 22	AC4	B	226	241	Right-handed alpha
Helix 23	AC5	B	267	275	Right-handed alpha
Helix 24	AC6	B	277	291	Right-handed alpha
Helix 25	AC7	C	12	25	Right-handed alpha
Helix 26	AC8	C	33	35	Right-handed 310
Helix 27	AC9	C	66	68	Right-handed 310
Helix 28	AD1	C	69	83	Right-handed alpha
Helix 29	AD2	C	90	99	Right-handed alpha
Helix 30	AD3	C	99	110	Right-handed alpha
Helix 31	AD4	C	125	133	Right-handed alpha
Helix 32	AD5	C	156	169	Right-handed alpha
Helix 33	AD6	C	180	184	Right-handed 310
Helix 34	AD7	C	226	241	Right-handed alpha
Helix 35	AD8	C	267	275	Right-handed alpha
Helix 36	AD9	C	277	289	Right-handed alpha
Helix 37	AE1	D	12	25	Right-handed alpha
Helix 38	AE2	D	33	35	Right-handed 310
Helix 39	AE3	D	66	68	Right-handed 310
Helix 40	AE4	D	69	83	Right-handed alpha
Helix 41	AE5	D	90	99	Right-handed alpha
Helix 42	AE6	D	99	110	Right-handed alpha
Helix 43	AE7	D	125	133	Right-handed alpha
Helix 44	AE8	D	156	169	Right-handed alpha
Helix 45	AE9	D	180	184	Right-handed 310
Helix 46	AF1	D	226	241	Right-handed alpha
Helix 47	AF2	D	267	275	Right-handed alpha
Helix 48	AF3	D	277	291	Right-handed alpha
Helix 49	AF4	E	12	25	Right-handed alpha
Helix 50	AF5	E	33	35	Right-handed 310
Helix 51	AF6	E	66	68	Right-handed 310
Helix 52	AF7	E	69	83	Right-handed alpha
Helix 53	AF8	E	90	99	Right-handed alpha
Helix 54	AF9	E	99	110	Right-handed alpha
Helix 55	AG1	E	125	133	Right-handed alpha
Helix 56	AG2	E	156	169	Right-handed alpha
Helix 57	AG3	E	180	184	Right-handed 310
Helix 58	AG4	E	226	241	Right-handed alpha
Helix 59	AG5	E	267	275	Right-handed alpha
Helix 60	AG6	E	277	290	Right-handed alpha
Helix 61	AG7	F	12	25	Right-handed alpha
Helix 62	AG8	F	33	35	Right-handed 310
Helix 63	AG9	F	66	68	Right-handed 310
Helix 64	AH1	F	69	83	Right-handed alpha
Helix 65	AH2	F	90	99	Right-handed alpha
Helix 66	AH3	F	99	110	Right-handed alpha
Helix 67	AH4	F	125	133	Right-handed alpha
Helix 68	AH5	F	156	168	Right-handed alpha
Helix 69	AH6	F	180	184	Right-handed 310
Helix 70	AH7	F	226	241	Right-handed alpha
Helix 71	AH8	F	267	275	Right-handed alpha
Helix 72	AH9	F	277	290	Right-handed alpha
Helix 73	AI1	G	12	25	Right-handed alpha
Helix 74	AI2	G	33	35	Right-handed 310
Helix 75	AI3	G	66	68	Right-handed 310
Helix 76	AI4	G	69	83	Right-handed alpha
Helix 77	AI5	G	90	99	Right-handed alpha
Helix 78	AI6	G	99	110	Right-handed alpha
Helix 79	AI7	G	125	133	Right-handed alpha
Helix 80	AI8	G	156	168	Right-handed alpha
Helix 81	AI9	G	180	184	Right-handed 310
Helix 82	AJ1	G	226	241	Right-handed alpha
Helix 83	AJ2	G	267	275	Right-handed alpha
Helix 84	AJ3	G	277	290	Right-handed alpha
Helix 85	AJ4	H	12	25	Right-handed alpha
Helix 86	AJ5	H	33	35	Right-handed 310
Helix 87	AJ6	H	66	68	Right-handed 310
Helix 88	AJ7	H	69	83	Right-handed alpha
Helix 89	AJ8	H	90	99	Right-handed alpha
Helix 90	AJ9	H	99	110	Right-handed alpha
Helix 91	AK1	H	125	133	Right-handed alpha
Helix 92	AK2	H	156	169	Right-handed alpha
Helix 93	AK3	H	180	184	Right-handed 310
Helix 94	AK4	H	226	241	Right-handed alpha
Helix 95	AK5	H	267	275	Right-handed alpha
Helix 96	AK6	H	277	290	Right-handed alpha

There are 25 sheets in PDB entry 7QYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	2	6	parallel
Strand 3	A	60	63	parallel
Strand 4	A	86	87	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	A	37	40	anti-parallel
Strand 4	D	117	120	anti-parallel
Strand 5	D	173	178	anti-parallel
Strand 6	D	138	144	anti-parallel
Strand 7	D	147	154	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	154	first strand
Strand 2	A	138	144	anti-parallel
Strand 3	A	173	178	anti-parallel
Strand 4	A	117	120	anti-parallel
Strand 5	D	37	40	anti-parallel
Strand 6	D	47	50	anti-parallel
Strand 7	D	53	54	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	196	204	anti-parallel
Strand 3	A	186	193	anti-parallel
Strand 4	A	244	252	anti-parallel
Strand 5	A	255	262	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	2	6	parallel
Strand 3	B	60	63	parallel
Strand 4	B	86	87	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	47	50	anti-parallel
Strand 3	B	37	40	anti-parallel
Strand 4	H	117	120	anti-parallel
Strand 5	H	173	178	anti-parallel
Strand 6	H	138	144	anti-parallel
Strand 7	H	147	154	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	154	first strand
Strand 2	B	138	144	anti-parallel
Strand 3	B	173	178	anti-parallel
Strand 4	B	117	120	anti-parallel
Strand 5	H	37	40	anti-parallel
Strand 6	H	47	50	anti-parallel
Strand 7	H	53	54	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	196	204	anti-parallel
Strand 3	B	186	193	anti-parallel
Strand 4	B	244	252	anti-parallel
Strand 5	B	255	262	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	2	6	parallel
Strand 3	C	60	63	parallel
Strand 4	C	86	87	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	47	50	anti-parallel
Strand 3	C	37	40	anti-parallel
Strand 4	F	117	120	anti-parallel
Strand 5	F	173	178	anti-parallel
Strand 6	F	138	144	anti-parallel
Strand 7	F	147	154	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	154	first strand
Strand 2	C	138	144	anti-parallel
Strand 3	C	173	178	anti-parallel
Strand 4	C	117	120	anti-parallel
Strand 5	F	37	40	anti-parallel
Strand 6	F	47	50	anti-parallel
Strand 7	F	53	54	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	196	204	anti-parallel
Strand 3	C	186	193	anti-parallel
Strand 4	C	244	252	anti-parallel
Strand 5	C	255	262	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	2	6	parallel
Strand 3	D	60	63	parallel
Strand 4	D	86	87	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	196	204	anti-parallel
Strand 3	D	186	193	anti-parallel
Strand 4	D	244	252	anti-parallel
Strand 5	D	255	262	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	32	first strand
Strand 2	E	2	6	parallel
Strand 3	E	60	63	parallel
Strand 4	E	86	87	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	47	50	anti-parallel
Strand 3	E	37	40	anti-parallel
Strand 4	G	117	120	anti-parallel
Strand 5	G	173	178	anti-parallel
Strand 6	G	138	144	anti-parallel
Strand 7	G	147	154	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	154	first strand
Strand 2	E	138	144	anti-parallel
Strand 3	E	173	178	anti-parallel
Strand 4	E	117	120	anti-parallel
Strand 5	G	37	40	anti-parallel
Strand 6	G	47	50	anti-parallel
Strand 7	G	53	54	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	221	first strand
Strand 2	E	196	204	anti-parallel
Strand 3	E	186	193	anti-parallel
Strand 4	E	244	252	anti-parallel
Strand 5	E	255	262	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	32	first strand
Strand 2	F	2	6	parallel
Strand 3	F	60	63	parallel
Strand 4	F	86	87	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	221	first strand
Strand 2	F	196	204	anti-parallel
Strand 3	F	186	193	anti-parallel
Strand 4	F	244	252	anti-parallel
Strand 5	F	255	262	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	32	first strand
Strand 2	G	2	6	parallel
Strand 3	G	60	63	parallel
Strand 4	G	86	87	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	221	first strand
Strand 2	G	196	204	anti-parallel
Strand 3	G	186	193	anti-parallel
Strand 4	G	244	252	anti-parallel
Strand 5	G	255	262	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	32	first strand
Strand 2	H	2	6	parallel
Strand 3	H	60	63	parallel
Strand 4	H	86	87	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	220	221	first strand
Strand 2	H	196	204	anti-parallel
Strand 3	H	186	193	anti-parallel
Strand 4	H	244	252	anti-parallel
Strand 5	H	255	262	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	23	25	first strand
Strand 2	T	29	32	anti-parallel
Strand 3	T	62	65	parallel
Strand 4	T	43	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QYR