Analysis of interatomic Contacts of Structural Units in PDB entry:
7R07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R07 entry

There are 5 chains in PDB entry 7R07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	GLU 43
A	GLY 45	ASN 599
B	SER 0	GLU 43
B	GLY 45	ASN 599
C	SER 0	PHE 13

There are198 helices in PDB entry 7R07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	13	Right-handed alpha
Helix 2	AA2	A	16	21	Right-handed alpha
Helix 3	AA3	A	30	34	Right-handed 310
Helix 4	AA4	A	57	65	Right-handed alpha
Helix 5	AA5	A	69	74	Right-handed alpha
Helix 6	AA6	A	102	116	Right-handed alpha
Helix 7	AA7	A	116	127	Right-handed alpha
Helix 8	AA8	A	141	153	Right-handed alpha
Helix 9	AA9	A	166	171	Right-handed alpha
Helix 10	AB1	A	174	182	Right-handed alpha
Helix 11	AB2	A	182	187	Right-handed alpha
Helix 12	AB3	A	193	205	Right-handed alpha
Helix 13	AB4	A	217	238	Right-handed alpha
Helix 14	AB5	A	255	274	Right-handed alpha
Helix 15	AB6	A	295	300	Right-handed alpha
Helix 16	AB7	A	310	331	Right-handed alpha
Helix 17	AB8	A	336	338	Right-handed 310
Helix 18	AB9	A	339	352	Right-handed alpha
Helix 19	AC1	A	354	364	Right-handed alpha
Helix 20	AC2	A	372	382	Right-handed alpha
Helix 21	AC3	A	383	386	Right-handed 310
Helix 22	AC4	A	387	402	Right-handed alpha
Helix 23	AC5	A	404	419	Right-handed alpha
Helix 24	AC6	A	419	433	Right-handed alpha
Helix 25	AC7	A	435	449	Right-handed alpha
Helix 26	AC8	A	456	462	Right-handed alpha
Helix 27	AC9	A	469	483	Right-handed alpha
Helix 28	AD1	A	487	505	Right-handed alpha
Helix 29	AD2	A	511	515	Right-handed 310
Helix 30	AD3	A	517	530	Right-handed alpha
Helix 31	AD4	A	534	545	Right-handed alpha
Helix 32	AD5	A	559	564	Right-handed alpha
Helix 33	AD6	A	570	582	Right-handed alpha
Helix 34	AD7	B	1	13	Right-handed alpha
Helix 35	AD8	B	14	21	Right-handed alpha
Helix 36	AD9	B	30	34	Right-handed 310
Helix 37	AE1	B	57	65	Right-handed alpha
Helix 38	AE2	B	102	115	Right-handed alpha
Helix 39	AE3	B	117	126	Right-handed alpha
Helix 40	AE4	B	141	153	Right-handed alpha
Helix 41	AE5	B	166	171	Right-handed alpha
Helix 42	AE6	B	172	174	Right-handed 310
Helix 43	AE7	B	175	182	Right-handed alpha
Helix 44	AE8	B	182	187	Right-handed alpha
Helix 45	AE9	B	193	205	Right-handed alpha
Helix 46	AF1	B	217	238	Right-handed alpha
Helix 47	AF2	B	255	273	Right-handed alpha
Helix 48	AF3	B	295	300	Right-handed alpha
Helix 49	AF4	B	301	303	Right-handed 310
Helix 50	AF5	B	310	332	Right-handed alpha
Helix 51	AF6	B	339	352	Right-handed alpha
Helix 52	AF7	B	354	364	Right-handed alpha
Helix 53	AF8	B	372	382	Right-handed alpha
Helix 54	AF9	B	383	386	Right-handed 310
Helix 55	AG1	B	387	402	Right-handed alpha
Helix 56	AG2	B	404	418	Right-handed alpha
Helix 57	AG3	B	419	433	Right-handed alpha
Helix 58	AG4	B	435	449	Right-handed alpha
Helix 59	AG5	B	456	463	Right-handed alpha
Helix 60	AG6	B	469	482	Right-handed alpha
Helix 61	AG7	B	487	506	Right-handed alpha
Helix 62	AG8	B	511	515	Right-handed 310
Helix 63	AG9	B	517	530	Right-handed alpha
Helix 64	AH1	B	534	546	Right-handed alpha
Helix 65	AH2	B	559	564	Right-handed alpha
Helix 66	AH3	B	570	582	Right-handed alpha
Helix 67	AH4	C	1	13	Right-handed alpha
Helix 68	AH5	C	16	21	Right-handed alpha
Helix 69	AH6	C	30	34	Right-handed 310
Helix 70	AH7	C	57	67	Right-handed alpha
Helix 71	AH8	C	69	74	Right-handed 310
Helix 72	AH9	C	102	116	Right-handed alpha
Helix 73	AI1	C	116	127	Right-handed alpha
Helix 74	AI2	C	141	153	Right-handed alpha
Helix 75	AI3	C	166	171	Right-handed alpha
Helix 76	AI4	C	174	181	Right-handed alpha
Helix 77	AI5	C	182	188	Right-handed alpha
Helix 78	AI6	C	193	204	Right-handed alpha
Helix 79	AI7	C	205	207	Right-handed 310
Helix 80	AI8	C	217	238	Right-handed alpha
Helix 81	AI9	C	255	273	Right-handed alpha
Helix 82	AJ1	C	278	282	Right-handed 310
Helix 83	AJ2	C	295	300	Right-handed alpha
Helix 84	AJ3	C	310	332	Right-handed alpha
Helix 85	AJ4	C	339	352	Right-handed alpha
Helix 86	AJ5	C	354	364	Right-handed alpha
Helix 87	AJ6	C	372	382	Right-handed alpha
Helix 88	AJ7	C	383	385	Right-handed 310
Helix 89	AJ8	C	386	402	Right-handed alpha
Helix 90	AJ9	C	404	419	Right-handed alpha
Helix 91	AK1	C	419	433	Right-handed alpha
Helix 92	AK2	C	435	449	Right-handed alpha
Helix 93	AK3	C	456	462	Right-handed alpha
Helix 94	AK4	C	469	482	Right-handed alpha
Helix 95	AK5	C	487	506	Right-handed alpha
Helix 96	AK6	C	511	515	Right-handed 310
Helix 97	AK7	C	517	529	Right-handed alpha
Helix 98	AK8	C	534	545	Right-handed alpha
Helix 99	AK9	C	559	564	Right-handed alpha
Helix 100	AL1	C	570	582	Right-handed alpha
Helix 101	AL2	D	1	13	Right-handed alpha
Helix 102	AL3	D	14	22	Right-handed alpha
Helix 103	AL4	D	30	34	Right-handed 310
Helix 104	AL5	D	57	65	Right-handed alpha
Helix 105	AL6	D	102	116	Right-handed alpha
Helix 106	AL7	D	116	127	Right-handed alpha
Helix 107	AL8	D	141	153	Right-handed alpha
Helix 108	AL9	D	166	171	Right-handed alpha
Helix 109	AM1	D	174	181	Right-handed alpha
Helix 110	AM2	D	183	188	Right-handed 310
Helix 111	AM3	D	193	204	Right-handed alpha
Helix 112	AM4	D	217	238	Right-handed alpha
Helix 113	AM5	D	255	273	Right-handed alpha
Helix 114	AM6	D	295	300	Right-handed alpha
Helix 115	AM7	D	310	331	Right-handed alpha
Helix 116	AM8	D	339	352	Right-handed alpha
Helix 117	AM9	D	354	364	Right-handed alpha
Helix 118	AN1	D	372	382	Right-handed alpha
Helix 119	AN2	D	383	386	Right-handed 310
Helix 120	AN3	D	387	402	Right-handed alpha
Helix 121	AN4	D	404	419	Right-handed alpha
Helix 122	AN5	D	419	434	Right-handed alpha
Helix 123	AN6	D	435	449	Right-handed alpha
Helix 124	AN7	D	456	462	Right-handed alpha
Helix 125	AN8	D	469	483	Right-handed alpha
Helix 126	AN9	D	487	505	Right-handed alpha
Helix 127	AO1	D	511	515	Right-handed 310
Helix 128	AO2	D	517	530	Right-handed alpha
Helix 129	AO3	D	534	543	Right-handed alpha
Helix 130	AO4	D	559	565	Right-handed alpha
Helix 131	AO5	D	570	582	Right-handed alpha
Helix 132	AO6	E	1	13	Right-handed alpha
Helix 133	AO7	E	14	21	Right-handed alpha
Helix 134	AO8	E	30	34	Right-handed 310
Helix 135	AO9	E	57	67	Right-handed alpha
Helix 136	AP1	E	69	74	Right-handed alpha
Helix 137	AP2	E	102	116	Right-handed alpha
Helix 138	AP3	E	116	127	Right-handed alpha
Helix 139	AP4	E	141	153	Right-handed alpha
Helix 140	AP5	E	166	171	Right-handed alpha
Helix 141	AP6	E	174	182	Right-handed alpha
Helix 142	AP7	E	183	188	Right-handed 310
Helix 143	AP8	E	193	206	Right-handed alpha
Helix 144	AP9	E	217	237	Right-handed alpha
Helix 145	AQ1	E	255	273	Right-handed alpha
Helix 146	AQ2	E	295	300	Right-handed alpha
Helix 147	AQ3	E	310	332	Right-handed alpha
Helix 148	AQ4	E	336	338	Right-handed 310
Helix 149	AQ5	E	339	351	Right-handed alpha
Helix 150	AQ6	E	354	364	Right-handed alpha
Helix 151	AQ7	E	372	382	Right-handed alpha
Helix 152	AQ8	E	383	386	Right-handed 310
Helix 153	AQ9	E	387	402	Right-handed alpha
Helix 154	AR1	E	404	419	Right-handed alpha
Helix 155	AR2	E	419	434	Right-handed alpha
Helix 156	AR3	E	435	450	Right-handed alpha
Helix 157	AR4	E	456	462	Right-handed alpha
Helix 158	AR5	E	469	482	Right-handed alpha
Helix 159	AR6	E	487	504	Right-handed alpha
Helix 160	AR7	E	511	515	Right-handed 310
Helix 161	AR8	E	517	530	Right-handed alpha
Helix 162	AR9	E	534	545	Right-handed alpha
Helix 163	AS1	E	559	564	Right-handed alpha
Helix 164	AS2	E	570	582	Right-handed alpha
Helix 165	AS3	F	1	13	Right-handed alpha
Helix 166	AS4	F	16	21	Right-handed alpha
Helix 167	AS5	F	30	34	Right-handed 310
Helix 168	AS6	F	57	66	Right-handed alpha
Helix 169	AS7	F	69	73	Right-handed 310
Helix 170	AS8	F	102	115	Right-handed alpha
Helix 171	AS9	F	117	127	Right-handed alpha
Helix 172	AT1	F	141	153	Right-handed alpha
Helix 173	AT2	F	174	182	Right-handed alpha
Helix 174	AT3	F	183	188	Right-handed alpha
Helix 175	AT4	F	193	204	Right-handed alpha
Helix 176	AT5	F	205	207	Right-handed 310
Helix 177	AT6	F	217	238	Right-handed alpha
Helix 178	AT7	F	255	273	Right-handed alpha
Helix 179	AT8	F	279	282	Right-handed 310
Helix 180	AT9	F	295	300	Right-handed alpha
Helix 181	AU1	F	310	331	Right-handed alpha
Helix 182	AU2	F	336	338	Right-handed 310
Helix 183	AU3	F	339	351	Right-handed alpha
Helix 184	AU4	F	354	364	Right-handed alpha
Helix 185	AU5	F	372	382	Right-handed alpha
Helix 186	AU6	F	383	386	Right-handed 310
Helix 187	AU7	F	387	402	Right-handed alpha
Helix 188	AU8	F	404	419	Right-handed alpha
Helix 189	AU9	F	419	434	Right-handed alpha
Helix 190	AV1	F	435	449	Right-handed alpha
Helix 191	AV2	F	456	462	Right-handed alpha
Helix 192	AV3	F	469	482	Right-handed alpha
Helix 193	AV4	F	487	504	Right-handed alpha
Helix 194	AV5	F	511	515	Right-handed 310
Helix 195	AV6	F	517	530	Right-handed alpha
Helix 196	AV7	F	534	544	Right-handed alpha
Helix 197	AV8	F	559	564	Right-handed alpha
Helix 198	AV9	F	570	582	Right-handed alpha

There are 16 sheets in PDB entry 7R07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	91	first strand
Strand 2	A	94	100	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	245	first strand
Strand 2	A	248	253	anti-parallel
Strand 3	A	158	164	anti-parallel
Strand 4	A	277	286	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	553	554	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	89	first strand
Strand 2	B	95	100	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	245	first strand
Strand 2	B	248	253	anti-parallel
Strand 3	B	158	162	anti-parallel
Strand 4	B	283	286	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	550	first strand
Strand 2	B	553	554	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	89	first strand
Strand 2	C	95	100	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	245	first strand
Strand 2	C	248	253	anti-parallel
Strand 3	C	158	163	anti-parallel
Strand 4	C	283	286	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	91	first strand
Strand 2	D	94	100	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	245	first strand
Strand 2	D	248	253	anti-parallel
Strand 3	D	158	164	anti-parallel
Strand 4	D	277	286	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	91	first strand
Strand 2	E	94	100	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	245	first strand
Strand 2	E	248	253	anti-parallel
Strand 3	E	158	164	anti-parallel
Strand 4	E	277	286	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	89	first strand
Strand 2	F	95	100	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	245	first strand
Strand 2	F	248	253	anti-parallel
Strand 3	F	158	164	anti-parallel
Strand 4	F	277	278	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	245	first strand
Strand 2	F	248	253	anti-parallel
Strand 3	F	158	164	anti-parallel
Strand 4	F	284	286	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	549	550	first strand
Strand 2	F	553	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R07

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R07