Analysis of interatomic Contacts of Structural Units in PDB entry:
7R08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R08 entry

There are 3 chains in PDB entry 7R08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 32	PHE 541
B	MET 32	PHE 541
C	MET 32	LEU 374

There are150 helices in PDB entry 7R08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	48	Right-handed alpha
Helix 2	AA2	A	49	54	Right-handed alpha
Helix 3	AA3	A	64	77	Right-handed alpha
Helix 4	AA4	A	85	90	Right-handed alpha
Helix 5	AA5	A	115	127	Right-handed alpha
Helix 6	AA6	A	128	145	Right-handed alpha
Helix 7	AA7	A	172	181	Right-handed alpha
Helix 8	AA8	A	182	184	Right-handed 310
Helix 9	AA9	A	195	200	Right-handed alpha
Helix 10	AB1	A	203	210	Right-handed alpha
Helix 11	AB2	A	224	235	Right-handed alpha
Helix 12	AB3	A	236	239	Right-handed 310
Helix 13	AB4	A	247	272	Right-handed alpha
Helix 14	AB5	A	292	308	Right-handed alpha
Helix 15	AB6	A	324	329	Right-handed alpha
Helix 16	AB7	A	331	340	Right-handed alpha
Helix 17	AB8	A	345	360	Right-handed alpha
Helix 18	AB9	A	363	380	Right-handed alpha
Helix 19	AC1	A	388	404	Right-handed alpha
Helix 20	AC2	A	407	423	Right-handed alpha
Helix 21	AC3	A	426	442	Right-handed alpha
Helix 22	AC4	A	447	462	Right-handed alpha
Helix 23	AC5	A	471	482	Right-handed alpha
Helix 24	AC6	A	506	517	Right-handed alpha
Helix 25	AC7	A	521	528	Right-handed alpha
Helix 26	AC8	A	533	539	Right-handed alpha
Helix 27	AC9	B	39	48	Right-handed alpha
Helix 28	AD1	B	49	54	Right-handed alpha
Helix 29	AD2	B	64	77	Right-handed alpha
Helix 30	AD3	B	85	90	Right-handed alpha
Helix 31	AD4	B	115	127	Right-handed alpha
Helix 32	AD5	B	128	141	Right-handed alpha
Helix 33	AD6	B	172	181	Right-handed alpha
Helix 34	AD7	B	196	200	Right-handed 310
Helix 35	AD8	B	201	207	Right-handed 310
Helix 36	AD9	B	224	236	Right-handed alpha
Helix 37	AE1	B	247	272	Right-handed alpha
Helix 38	AE2	B	292	310	Right-handed alpha
Helix 39	AE3	B	315	319	Right-handed 310
Helix 40	AE4	B	331	339	Right-handed alpha
Helix 41	AE5	B	345	360	Right-handed alpha
Helix 42	AE6	B	363	380	Right-handed alpha
Helix 43	AE7	B	388	404	Right-handed alpha
Helix 44	AE8	B	407	423	Right-handed alpha
Helix 45	AE9	B	426	442	Right-handed alpha
Helix 46	AF1	B	447	460	Right-handed alpha
Helix 47	AF2	B	471	482	Right-handed alpha
Helix 48	AF3	B	504	516	Right-handed alpha
Helix 49	AF4	B	521	526	Right-handed alpha
Helix 50	AF5	B	533	538	Right-handed alpha
Helix 51	AF6	B	539	541	Right-handed 310
Helix 52	AF7	C	34	38	Right-handed 310
Helix 53	AF8	C	39	48	Right-handed alpha
Helix 54	AF9	C	49	54	Right-handed alpha
Helix 55	AG1	C	64	77	Right-handed alpha
Helix 56	AG2	C	85	90	Right-handed alpha
Helix 57	AG3	C	115	127	Right-handed alpha
Helix 58	AG4	C	128	145	Right-handed alpha
Helix 59	AG5	C	172	181	Right-handed alpha
Helix 60	AG6	C	196	200	Right-handed 310
Helix 61	AG7	C	201	209	Right-handed 310
Helix 62	AG8	C	224	237	Right-handed alpha
Helix 63	AG9	C	247	272	Right-handed alpha
Helix 64	AH1	C	292	310	Right-handed alpha
Helix 65	AH2	C	315	319	Right-handed 310
Helix 66	AH3	C	326	330	Right-handed 310
Helix 67	AH4	C	331	340	Right-handed alpha
Helix 68	AH5	C	345	360	Right-handed alpha
Helix 69	AH6	C	363	380	Right-handed alpha
Helix 70	AH7	C	387	404	Right-handed alpha
Helix 71	AH8	C	407	423	Right-handed alpha
Helix 72	AH9	C	426	442	Right-handed alpha
Helix 73	AI1	C	447	460	Right-handed alpha
Helix 74	AI2	C	471	483	Right-handed alpha
Helix 75	AI3	C	504	517	Right-handed alpha
Helix 76	AI4	C	521	526	Right-handed alpha
Helix 77	AI5	C	533	539	Right-handed alpha
Helix 78	AI6	D	39	48	Right-handed alpha
Helix 79	AI7	D	49	54	Right-handed alpha
Helix 80	AI8	D	64	77	Right-handed alpha
Helix 81	AI9	D	115	127	Right-handed alpha
Helix 82	AJ1	D	128	145	Right-handed alpha
Helix 83	AJ2	D	172	181	Right-handed alpha
Helix 84	AJ3	D	182	184	Right-handed 310
Helix 85	AJ4	D	195	200	Right-handed alpha
Helix 86	AJ5	D	201	206	Right-handed 310
Helix 87	AJ6	D	225	236	Right-handed alpha
Helix 88	AJ7	D	247	272	Right-handed alpha
Helix 89	AJ8	D	292	309	Right-handed alpha
Helix 90	AJ9	D	331	340	Right-handed alpha
Helix 91	AK1	D	345	360	Right-handed alpha
Helix 92	AK2	D	363	380	Right-handed alpha
Helix 93	AK3	D	388	402	Right-handed alpha
Helix 94	AK4	D	404	406	Right-handed 310
Helix 95	AK5	D	407	423	Right-handed alpha
Helix 96	AK6	D	426	443	Right-handed alpha
Helix 97	AK7	D	448	459	Right-handed alpha
Helix 98	AK8	D	471	481	Right-handed alpha
Helix 99	AK9	D	504	517	Right-handed alpha
Helix 100	AL1	D	521	526	Right-handed alpha
Helix 101	AL2	D	533	538	Right-handed alpha
Helix 102	AL3	E	39	48	Right-handed alpha
Helix 103	AL4	E	49	54	Right-handed alpha
Helix 104	AL5	E	64	77	Right-handed alpha
Helix 105	AL6	E	85	90	Right-handed alpha
Helix 106	AL7	E	115	127	Right-handed alpha
Helix 107	AL8	E	128	144	Right-handed alpha
Helix 108	AL9	E	172	181	Right-handed alpha
Helix 109	AM1	E	182	184	Right-handed 310
Helix 110	AM2	E	196	200	Right-handed 310
Helix 111	AM3	E	201	207	Right-handed 310
Helix 112	AM4	E	223	236	Right-handed alpha
Helix 113	AM5	E	247	272	Right-handed alpha
Helix 114	AM6	E	292	310	Right-handed alpha
Helix 115	AM7	E	326	330	Right-handed 310
Helix 116	AM8	E	331	339	Right-handed alpha
Helix 117	AM9	E	345	360	Right-handed alpha
Helix 118	AN1	E	363	380	Right-handed alpha
Helix 119	AN2	E	388	404	Right-handed alpha
Helix 120	AN3	E	407	423	Right-handed alpha
Helix 121	AN4	E	426	442	Right-handed alpha
Helix 122	AN5	E	447	458	Right-handed alpha
Helix 123	AN6	E	471	482	Right-handed alpha
Helix 124	AN7	E	504	517	Right-handed alpha
Helix 125	AN8	E	521	526	Right-handed alpha
Helix 126	AN9	E	533	539	Right-handed alpha
Helix 127	AO1	F	39	48	Right-handed alpha
Helix 128	AO2	F	49	54	Right-handed alpha
Helix 129	AO3	F	64	77	Right-handed alpha
Helix 130	AO4	F	85	90	Right-handed alpha
Helix 131	AO5	F	115	127	Right-handed alpha
Helix 132	AO6	F	128	144	Right-handed alpha
Helix 133	AO7	F	172	181	Right-handed alpha
Helix 134	AO8	F	182	184	Right-handed 310
Helix 135	AO9	F	201	207	Right-handed 310
Helix 136	AP1	F	224	234	Right-handed alpha
Helix 137	AP2	F	247	272	Right-handed alpha
Helix 138	AP3	F	292	310	Right-handed alpha
Helix 139	AP4	F	331	339	Right-handed alpha
Helix 140	AP5	F	345	360	Right-handed alpha
Helix 141	AP6	F	363	378	Right-handed alpha
Helix 142	AP7	F	385	402	Right-handed alpha
Helix 143	AP8	F	404	406	Right-handed 310
Helix 144	AP9	F	407	423	Right-handed alpha
Helix 145	AQ1	F	426	442	Right-handed alpha
Helix 146	AQ2	F	447	460	Right-handed alpha
Helix 147	AQ3	F	471	483	Right-handed alpha
Helix 148	AQ4	F	504	517	Right-handed alpha
Helix 149	AQ5	F	521	526	Right-handed alpha
Helix 150	AQ6	F	533	538	Right-handed alpha

There are 12 sheets in PDB entry 7R08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	100	first strand
Strand 2	A	109	113	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	277	282	parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	187	191	anti-parallel
Strand 5	A	320	322	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	101	first strand
Strand 2	B	108	113	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	278	281	parallel
Strand 3	B	286	290	anti-parallel
Strand 4	B	187	191	anti-parallel
Strand 5	B	320	322	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	100	first strand
Strand 2	C	109	113	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	150	first strand
Strand 2	C	278	282	parallel
Strand 3	C	285	290	anti-parallel
Strand 4	C	187	191	anti-parallel
Strand 5	C	320	322	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	100	first strand
Strand 2	D	109	113	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	150	first strand
Strand 2	D	278	282	parallel
Strand 3	D	285	290	anti-parallel
Strand 4	D	187	192	anti-parallel
Strand 5	D	320	322	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	100	first strand
Strand 2	E	109	113	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	150	first strand
Strand 2	E	277	282	parallel
Strand 3	E	285	290	anti-parallel
Strand 4	E	187	191	anti-parallel
Strand 5	E	320	322	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	100	first strand
Strand 2	F	109	113	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	150	first strand
Strand 2	F	277	282	parallel
Strand 3	F	285	290	anti-parallel
Strand 4	F	187	192	anti-parallel
Strand 5	F	320	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R08

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R08