Analysis of interatomic Contacts of Structural Units in PDB entry:
7R09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R09 entry

There is 1 chain in PDB entry 7R09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8LEU 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7R09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
49 55Right-handed alpha
Helix 3
AA3
A
65 67Right-handed 310
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
92 102Right-handed alpha
Helix 6
AA6
A
110 115Right-handed 310
Helix 7
AA7
A
120 135Right-handed alpha
Helix 8
AA8
A
142 147Right-handed alpha
Helix 9
AA9
A
148 157Right-handed alpha
Helix 10
AB1
A
174 176Right-handed 310
Helix 11
AB2
A
177 183Right-handed alpha
Helix 12
AB3
A
189 194Right-handed alpha
Helix 13
AB4
A
210 223Right-handed alpha
Helix 14
AB5
A
311 322Right-handed alpha
Helix 15
AB6
A
323 330Right-handed alpha
Helix 16
AB7
A
336 340Right-handed 310
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There are 3 sheets in PDB entry 7R09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
34 40parallel
Strand 3
A
10 15parallel
Strand 4
A
80 83parallel
Strand 5
A
105 108parallel
Strand 6
A
137 140parallel
Strand 7
A
333 334parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 238first strand
Strand 2
A
257 268anti-parallel
Strand 3
A
273 281anti-parallel
Strand 4
A
161 172parallel
Strand 5
A
290 298anti-parallel
Strand 6
A
303 308anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
250 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il