Analysis of interatomic Contacts of Structural Units in PDB entry:
7R0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R0E entry

There are 7 chains in PDB entry 7R0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	ARG 716
B	MET 1	GLN 756
C	MET 1	ARG 737
M	A 2	U 15
M	U 17	C 19
R	A 4	U 21
V	A 1	G 14

There are 95 helices in PDB entry 7R0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	9	Right-handed alpha
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	31	50	Right-handed alpha
Helix 4	AA4	A	83	99	Right-handed alpha
Helix 5	AA5	A	126	139	Right-handed alpha
Helix 6	AA6	A	158	160	Right-handed 310
Helix 7	AA7	A	164	184	Right-handed alpha
Helix 8	AA8	A	187	194	Right-handed alpha
Helix 9	AA9	A	209	216	Right-handed alpha
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	240	249	Right-handed alpha
Helix 12	AB3	A	302	313	Right-handed alpha
Helix 13	AB4	A	330	350	Right-handed alpha
Helix 14	AB5	A	363	370	Right-handed alpha
Helix 15	AB6	A	380	385	Right-handed alpha
Helix 16	AB7	A	405	415	Right-handed alpha
Helix 17	AB8	A	433	451	Right-handed alpha
Helix 18	AB9	A	453	476	Right-handed alpha
Helix 19	AC1	A	533	538	Right-handed 310
Helix 20	AC2	A	571	580	Right-handed alpha
Helix 21	AC3	A	582	604	Right-handed alpha
Helix 22	AC4	A	607	613	Right-handed alpha
Helix 23	AC5	A	632	650	Right-handed alpha
Helix 24	AC6	A	652	674	Right-handed alpha
Helix 25	AC7	A	682	692	Right-handed alpha
Helix 26	AC8	A	697	715	Right-handed alpha
Helix 27	AC9	B	5	11	Right-handed 310
Helix 28	AD1	B	13	22	Right-handed 310
Helix 29	AD2	B	35	49	Right-handed alpha
Helix 30	AD3	B	84	99	Right-handed alpha
Helix 31	AD4	B	101	117	Right-handed alpha
Helix 32	AD5	B	118	124	Right-handed 310
Helix 33	AD6	B	139	153	Right-handed alpha
Helix 34	AD7	B	156	161	Right-handed 310
Helix 35	AD8	B	162	175	Right-handed alpha
Helix 36	AD9	B	214	222	Right-handed alpha
Helix 37	AE1	B	248	265	Right-handed alpha
Helix 38	AE2	B	274	293	Right-handed alpha
Helix 39	AE3	B	308	313	Right-handed alpha
Helix 40	AE4	B	314	326	Right-handed alpha
Helix 41	AE5	B	330	346	Right-handed alpha
Helix 42	AE6	B	371	373	Right-handed 310
Helix 43	AE7	B	382	393	Right-handed alpha
Helix 44	AE8	B	412	426	Right-handed alpha
Helix 45	AE9	B	428	433	Right-handed alpha
Helix 46	AF1	B	455	473	Right-handed alpha
Helix 47	AF2	B	508	512	Right-handed 310
Helix 48	AF3	B	518	536	Right-handed alpha
Helix 49	AF4	B	540	560	Right-handed alpha
Helix 50	AF5	B	572	583	Right-handed alpha
Helix 51	AF6	B	585	589	Right-handed 310
Helix 52	AF7	B	590	594	Right-handed 310
Helix 53	AF8	B	600	604	Right-handed 310
Helix 54	AF9	B	607	612	Right-handed alpha
Helix 55	AG1	B	613	616	Right-handed 310
Helix 56	AG2	B	617	625	Right-handed alpha
Helix 57	AG3	B	672	677	Right-handed 310
Helix 58	AG4	B	680	698	Right-handed alpha
Helix 59	AG5	B	700	704	Right-handed 310
Helix 60	AG6	B	713	732	Right-handed alpha
Helix 61	AG7	B	736	756	Right-handed alpha
Helix 62	AG8	C	2	13	Right-handed alpha
Helix 63	AG9	C	13	23	Right-handed alpha
Helix 64	AH1	C	24	33	Right-handed alpha
Helix 65	AH2	C	42	51	Right-handed alpha
Helix 66	AH3	C	62	67	Right-handed alpha
Helix 67	AH4	C	92	103	Right-handed alpha
Helix 68	AH5	C	110	115	Right-handed alpha
Helix 69	AH6	C	115	127	Right-handed alpha
Helix 70	AH7	C	155	168	Right-handed alpha
Helix 71	AH8	C	169	172	Right-handed 310
Helix 72	AH9	C	179	193	Right-handed alpha
Helix 73	AI1	C	199	212	Right-handed alpha
Helix 74	AI2	C	225	230	Right-handed alpha
Helix 75	AI3	C	231	236	Right-handed alpha
Helix 76	AI4	C	251	271	Right-handed alpha
Helix 77	AI5	C	275	286	Right-handed alpha
Helix 78	AI6	C	294	300	Right-handed alpha
Helix 79	AI7	C	305	315	Right-handed alpha
Helix 80	AI8	C	390	406	Right-handed alpha
Helix 81	AI9	C	407	413	Right-handed alpha
Helix 82	AJ1	C	429	439	Right-handed alpha
Helix 83	AJ2	C	442	450	Right-handed alpha
Helix 84	AJ3	C	514	518	Right-handed 310
Helix 85	AJ4	C	541	556	Right-handed alpha
Helix 86	AJ5	C	556	567	Right-handed alpha
Helix 87	AJ6	C	567	573	Right-handed alpha
Helix 88	AJ7	C	574	576	Right-handed 310
Helix 89	AJ8	C	577	582	Right-handed alpha
Helix 90	AJ9	C	585	587	Right-handed 310
Helix 91	AK1	C	588	606	Right-handed alpha
Helix 92	AK2	C	611	619	Right-handed alpha
Helix 93	AK3	C	620	624	Right-handed 310
Helix 94	AK4	C	701	705	Right-handed 310
Helix 95	AK5	C	709	713	Right-handed 310

There are 23 sheets in PDB entry 7R0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	53	54	anti-parallel
Strand 3	A	73	74	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	155	156	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	304	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	437	443	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	518	526	anti-parallel
Strand 4	A	556	570	anti-parallel
Strand 5	A	540	551	anti-parallel
Strand 6	A	317	324	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	480	490	anti-parallel
Strand 4	A	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	379	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel
Strand 4	A	391	392	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	631	first strand
Strand 2	A	619	623	anti-parallel
Strand 3	B	2	3	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	135	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	185	first strand
Strand 2	B	206	213	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	59	anti-parallel
Strand 3	C	89	91	anti-parallel
Strand 4	C	78	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	148	first strand
Strand 2	C	214	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	287	289	anti-parallel
Strand 3	C	529	531	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	325	first strand
Strand 2	C	328	335	anti-parallel
Strand 3	C	361	366	anti-parallel
Strand 4	C	371	377	anti-parallel
Strand 5	C	380	386	anti-parallel
Strand 6	C	478	480	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	345	first strand
Strand 2	C	351	357	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	453	first strand
Strand 2	C	473	474	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	504	506	anti-parallel
Strand 3	C	511	513	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	635	640	first strand
Strand 2	C	643	648	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	656	659	first strand
Strand 2	C	664	667	anti-parallel
Strand 3	C	670	674	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	698	first strand
Strand 2	C	732	736	anti-parallel
Strand 3	C	722	724	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R0E