Analysis of interatomic Contacts of Structural Units in PDB entry:
7R0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R0J entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7R0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 356	GLU 356
A	CYS 358	CYS 358
A	ALA 361	ALA 361
A	LEU 365	ASP 368
C	THR 6	PRO 366
D	GLY 3	ALA 248

There are 4 helices in PDB entry 7R0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	98	109	Right-handed alpha
Helix 2	AA2	C	278	282	Right-handed 310
Helix 3	AA3	D	188	191	Right-handed 310
Helix 4	AA4	D	213	217	Right-handed 310

There are 10 sheets in PDB entry 7R0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	C	7	12	anti-parallel
Strand 3	C	18	22	anti-parallel
Strand 4	C	37	43	anti-parallel
Strand 5	C	112	117	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	87	first strand
Strand 2	C	53	62	anti-parallel
Strand 3	C	141	150	anti-parallel
Strand 4	C	163	168	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	87	first strand
Strand 2	C	53	62	anti-parallel
Strand 3	C	141	150	anti-parallel
Strand 4	C	127	129	anti-parallel
Strand 5	C	288	290	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	188	first strand
Strand 2	C	197	203	anti-parallel
Strand 3	C	214	222	anti-parallel
Strand 4	C	266	274	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	258	first strand
Strand 2	C	228	241	anti-parallel
Strand 3	C	317	329	anti-parallel
Strand 4	C	343	349	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	65	70	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	105	108	parallel
Strand 3	D	88	93	anti-parallel
Strand 4	D	36	41	anti-parallel
Strand 5	D	48	52	anti-parallel
Strand 6	D	56	57	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	105	108	parallel
Strand 3	D	88	93	anti-parallel
Strand 4	D	100	101	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	143	151	anti-parallel
Strand 3	D	204	210	anti-parallel
Strand 4	D	194	199	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	138	first strand
Strand 2	D	240	244	parallel
Strand 3	D	218	224	anti-parallel
Strand 4	D	160	165	anti-parallel
Strand 5	D	171	178	anti-parallel
Strand 6	D	183	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R0J