Analysis of interatomic Contacts of Structural Units in PDB entry:
7R0W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R0W entry

There are 18 chains in PDB entry 7R0W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	THR 2	ILE 65
I	MET 1	LEU 222
J	SER 2	PHE 160
K	TYR 1	PHE 285
M	MET 1	ILE 32
N	MET 1	SER 34
O	MET 1	GLY 32
P	MET 1	PHE 29
A	MET 1	LEU 222
B	SER 2	PHE 160
C	TYR 1	PHE 285
D	ASP 21	ALA 192
E	MET 1	ILE 32
F	MET 1	SER 34
G	MET 1	GLY 32
H	MET 1	PHE 29
L	ASP 21	ALA 192
V	THR 2	ILE 65

There are 69 helices in PDB entry 7R0W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	19	26	Right-handed alpha
Helix 2	AA2	X	38	42	Right-handed 310
Helix 3	AA3	I	3	9	Right-handed alpha
Helix 4	AA4	I	9	20	Right-handed alpha
Helix 5	AA5	I	21	31	Right-handed alpha
Helix 6	AA6	I	38	40	Right-handed 310
Helix 7	AA7	I	41	63	Right-handed alpha
Helix 8	AA8	I	71	81	Right-handed alpha
Helix 9	AA9	I	85	114	Right-handed alpha
Helix 10	AB1	I	121	145	Right-handed alpha
Helix 11	AB2	I	148	161	Right-handed alpha
Helix 12	AB3	I	162	165	Right-handed 310
Helix 13	AB4	I	167	178	Right-handed alpha
Helix 14	AB5	I	183	196	Right-handed alpha
Helix 15	AB6	I	196	217	Right-handed alpha
Helix 16	AB7	J	11	20	Right-handed alpha
Helix 17	AB8	J	23	27	Right-handed 310
Helix 18	AB9	J	38	58	Right-handed alpha
Helix 19	AC1	J	78	80	Right-handed 310
Helix 20	AC2	J	81	91	Right-handed alpha
Helix 21	AC3	J	93	116	Right-handed alpha
Helix 22	AC4	J	122	125	Right-handed 310
Helix 23	AC5	J	126	149	Right-handed alpha
Helix 24	AC6	K	2	9	Right-handed alpha
Helix 25	AC7	K	20	25	Right-handed 310
Helix 26	AC8	K	91	99	Right-handed alpha
Helix 27	AC9	K	122	124	Right-handed 310
Helix 28	AD1	K	247	284	Right-handed alpha
Helix 29	AD2	M	2	29	Right-handed alpha
Helix 30	AD3	N	3	6	Right-handed 310
Helix 31	AD4	N	7	33	Right-handed alpha
Helix 32	AD5	O	3	30	Right-handed alpha
Helix 33	AD6	P	2	27	Right-handed alpha
Helix 34	AD7	A	9	20	Right-handed alpha
Helix 35	AD8	A	20	31	Right-handed alpha
Helix 36	AD9	A	38	40	Right-handed 310
Helix 37	AE1	A	41	63	Right-handed alpha
Helix 38	AE2	A	71	81	Right-handed alpha
Helix 39	AE3	A	85	114	Right-handed alpha
Helix 40	AE4	A	121	144	Right-handed alpha
Helix 41	AE5	A	148	161	Right-handed alpha
Helix 42	AE6	A	162	165	Right-handed 310
Helix 43	AE7	A	168	178	Right-handed alpha
Helix 44	AE8	A	183	196	Right-handed alpha
Helix 45	AE9	A	196	217	Right-handed alpha
Helix 46	AF1	B	11	20	Right-handed alpha
Helix 47	AF2	B	23	27	Right-handed 310
Helix 48	AF3	B	38	58	Right-handed alpha
Helix 49	AF4	B	78	80	Right-handed 310
Helix 50	AF5	B	81	91	Right-handed alpha
Helix 51	AF6	B	93	116	Right-handed alpha
Helix 52	AF7	B	122	125	Right-handed 310
Helix 53	AF8	B	126	148	Right-handed alpha
Helix 54	AF9	C	2	9	Right-handed alpha
Helix 55	AG1	C	20	25	Right-handed 310
Helix 56	AG2	C	91	99	Right-handed alpha
Helix 57	AG3	C	247	284	Right-handed alpha
Helix 58	AG4	D	24	55	Right-handed alpha
Helix 59	AG5	D	77	82	Right-handed alpha
Helix 60	AG6	D	96	98	Right-handed 310
Helix 61	AG7	E	2	29	Right-handed alpha
Helix 62	AG8	F	3	6	Right-handed 310
Helix 63	AG9	F	7	32	Right-handed alpha
Helix 64	AH1	G	3	30	Right-handed alpha
Helix 65	AH2	H	2	26	Right-handed alpha
Helix 66	AH3	L	24	55	Right-handed alpha
Helix 67	AH4	L	77	84	Right-handed alpha
Helix 68	AH5	L	96	98	Right-handed 310
Helix 69	AH6	V	19	26	Right-handed alpha

There are 19 sheets in PDB entry 7R0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	54	57	first strand
Strand 2	X	45	49	anti-parallel
Strand 3	X	29	34	anti-parallel
Strand 4	X	8	11	anti-parallel
Strand 5	X	62	64	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	33	first strand
Strand 2	J	29	30	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	35	first strand
Strand 2	K	45	51	anti-parallel
Strand 3	K	126	132	anti-parallel
Strand 4	K	83	84	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	40	first strand
Strand 2	K	235	245	parallel
Strand 3	K	145	155	anti-parallel
Strand 4	K	71	77	anti-parallel
Strand 5	K	113	120	anti-parallel
Strand 6	K	104	105	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	60	61	first strand
Strand 2	K	67	68	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	191	193	first strand
Strand 2	K	205	207	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	B	29	30	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	126	132	anti-parallel
Strand 4	C	83	84	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	241	245	parallel
Strand 3	C	145	154	anti-parallel
Strand 4	C	71	77	anti-parallel
Strand 5	C	113	120	anti-parallel
Strand 6	C	104	105	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	241	245	parallel
Strand 3	C	145	154	anti-parallel
Strand 4	C	236	238	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	67	68	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	205	207	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	100	103	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	162	164	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	135	137	anti-parallel
Strand 3	D	144	145	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	67	first strand
Strand 2	L	174	175	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	90	94	first strand
Strand 2	L	100	104	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	130	first strand
Strand 2	L	135	137	anti-parallel
Strand 3	L	144	146	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	55	57	first strand
Strand 2	V	43	48	anti-parallel
Strand 3	V	29	37	anti-parallel
Strand 4	V	8	11	anti-parallel
Strand 5	V	62	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R0W

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R0W