Analysis of interatomic Contacts of Structural Units in PDB entry:
7R1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R1D entry

There are 3 chains in PDB entry 7R1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 95GLY 286
A
 PHE 8GLU 412
B
 LEU 84PRO 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7R1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
96 114Right-handed alpha
Helix 2
AA2
C
115 127Right-handed alpha
Helix 3
AA3
C
132 137Right-handed alpha
Helix 4
AA4
C
140 150Right-handed alpha
Helix 5
AA5
C
159 169Right-handed alpha
Helix 6
AA6
C
177 199Right-handed alpha
Helix 7
AA7
C
281 286Right-handed alpha
Helix 8
AA8
A
9 27Right-handed alpha
Helix 9
AA9
A
27 31Right-handed alpha
Helix 10
AB1
A
348 350Right-handed 310
Helix 11
AB2
A
356 360Right-handed 310
Helix 12
AB3
A
406 409Right-handed 310
Helix 13
AB4
B
107 109Right-handed 310
Helix 14
AB5
B
114 125Right-handed alpha
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There are 12 sheets in PDB entry 7R1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 158first strand
Strand 2
A
93 94anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 217first strand
Strand 2
C
279 280anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 267first strand
Strand 2
C
251 256anti-parallel
Strand 3
C
236 246anti-parallel
Strand 4
C
225 230anti-parallel
Strand 5
C
271 273anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
398 404anti-parallel
Strand 3
A
390 394anti-parallel
Strand 4
A
377 382anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
116 123anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
85 87anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
136 143anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
171 173anti-parallel
Strand 5
A
216 217parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
221 223anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 235first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
251 256anti-parallel
Strand 4
A
267 270anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 281first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
311 313anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
332 336anti-parallel
Strand 3
A
342 346anti-parallel
Strand 4
A
366 370anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
102 105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il