Analysis of interatomic Contacts of Structural Units in PDB entry:
7R1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R1Y entry

There is 1 chain in PDB entry 7R1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19GLU 967
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7R1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 37Right-handed alpha
Helix 2
AA2
A
42 47Right-handed alpha
Helix 3
AA3
A
90 99Right-handed alpha
Helix 4
AA4
A
305 318Right-handed alpha
Helix 5
AA5
A
321 326Right-handed 310
Helix 6
AA6
A
379 383Right-handed 310
Helix 7
AA7
A
501 513Right-handed alpha
Helix 8
AA8
A
519 528Right-handed alpha
Helix 9
AA9
A
529 542Right-handed alpha
Helix 10
AB1
A
549 562Right-handed alpha
Helix 11
AB2
A
647 661Right-handed alpha
Helix 12
AB3
A
662 664Right-handed 310
Helix 13
AB4
A
689 710Right-handed alpha
Helix 14
AB5
A
761 787Right-handed alpha
Helix 15
AB6
A
788 795Right-handed alpha
Helix 16
AB7
A
797 806Right-handed alpha
Helix 17
AB8
A
808 814Right-handed alpha
Helix 18
AB9
A
818 834Right-handed alpha
Helix 19
AC1
A
838 849Right-handed alpha
Helix 20
AC2
A
854 870Right-handed alpha
Helix 21
AC3
A
875 892Right-handed alpha
Helix 22
AC4
A
898 909Right-handed alpha
Helix 23
AC5
A
911 927Right-handed alpha
Helix 24
AC6
A
951 967Right-handed alpha
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There are 7 sheets in PDB entry 7R1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
372 377parallel
Strand 3
A
352 357anti-parallel
Strand 4
A
344 348anti-parallel
Strand 5
A
328 333anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
493 498anti-parallel
Strand 3
A
485 489anti-parallel
Strand 4
A
446 449anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
115 117anti-parallel
Strand 3
A
124 126anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
172 177anti-parallel
Strand 4
A
207 209anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 220first strand
Strand 2
A
226 230anti-parallel
Strand 3
A
235 239anti-parallel
Strand 4
A
252 255anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 271first strand
Strand 2
A
276 281anti-parallel
Strand 3
A
286 290anti-parallel
Strand 4
A
299 304anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 400first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
414 421anti-parallel
Strand 4
A
434 441anti-parallel
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