Analysis of interatomic Contacts of Structural Units in PDB entry:
7R24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R24 entry

There are 3 chains in PDB entry 7R24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 211LEU 360
C
 GLU 3SER 120
E
 GLU 3SER 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7R24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
217 233Right-handed alpha
Helix 2
AA2
A
235 243Right-handed alpha
Helix 3
AA3
A
244 247Right-handed 310
Helix 4
AA4
A
249 259Right-handed alpha
Helix 5
AA5
A
260 262Right-handed 310
Helix 6
AA6
A
264 290Right-handed alpha
Helix 7
AA7
A
298 314Right-handed alpha
Helix 8
AA8
A
318 329Right-handed alpha
Helix 9
AA9
A
331 340Right-handed alpha
Helix 10
AB1
A
345 360Right-handed alpha
Helix 11
AB2
C
89 93Right-handed 310
Helix 12
AB3
E
30 34Right-handed 310
Helix 13
AB4
E
89 93Right-handed 310
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There are 5 sheets in PDB entry 7R24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
19 27anti-parallel
Strand 3
C
80 86anti-parallel
Strand 4
C
70 74anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
117 119parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
48 54anti-parallel
Strand 3
C
35 41anti-parallel
Strand 4
C
95 101anti-parallel
Strand 5
C
109 110anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 9first strand
Strand 2
E
19 26anti-parallel
Strand 3
E
80 86anti-parallel
Strand 4
E
70 75anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
60 62first strand
Strand 2
E
48 53anti-parallel
Strand 3
E
35 41anti-parallel
Strand 4
E
95 101anti-parallel
Strand 5
E
122 123anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il