Analysis of interatomic Contacts of Structural Units in PDB entry:
7R34

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R34 entry

There are 2 chains in PDB entry 7R34 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 77	GLY 643
B	SER 77	GLY 643

There are 45 helices in PDB entry 7R34. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	103	Right-handed alpha
Helix 2	AA2	A	121	126	Right-handed alpha
Helix 3	AA3	A	129	134	Right-handed alpha
Helix 4	AA4	A	147	151	Right-handed 310
Helix 5	AA5	A	164	169	Right-handed 310
Helix 6	AA6	A	178	184	Right-handed alpha
Helix 7	AA7	A	191	202	Right-handed alpha
Helix 8	AA8	A	229	243	Right-handed alpha
Helix 9	AA9	A	275	281	Right-handed alpha
Helix 10	AB1	A	282	285	Right-handed 310
Helix 11	AB2	A	341	354	Right-handed alpha
Helix 12	AB3	A	357	363	Right-handed alpha
Helix 13	AB4	A	392	396	Right-handed 310
Helix 14	AB5	A	399	405	Right-handed alpha
Helix 15	AB6	A	412	421	Right-handed alpha
Helix 16	AB7	A	425	429	Right-handed 310
Helix 17	AB8	A	461	472	Right-handed alpha
Helix 18	AB9	A	521	540	Right-handed alpha
Helix 19	AC1	A	540	545	Right-handed alpha
Helix 20	AC2	A	559	571	Right-handed alpha
Helix 21	AC3	A	609	613	Right-handed 310
Helix 22	AC4	A	621	637	Right-handed alpha
Helix 23	AC5	B	92	103	Right-handed alpha
Helix 24	AC6	B	121	126	Right-handed alpha
Helix 25	AC7	B	129	134	Right-handed alpha
Helix 26	AC8	B	147	151	Right-handed 310
Helix 27	AC9	B	164	169	Right-handed 310
Helix 28	AD1	B	178	184	Right-handed alpha
Helix 29	AD2	B	191	194	Right-handed 310
Helix 30	AD3	B	195	202	Right-handed alpha
Helix 31	AD4	B	229	243	Right-handed alpha
Helix 32	AD5	B	275	280	Right-handed alpha
Helix 33	AD6	B	280	285	Right-handed alpha
Helix 34	AD7	B	341	354	Right-handed alpha
Helix 35	AD8	B	357	364	Right-handed alpha
Helix 36	AD9	B	392	396	Right-handed 310
Helix 37	AE1	B	399	405	Right-handed alpha
Helix 38	AE2	B	412	423	Right-handed alpha
Helix 39	AE3	B	425	429	Right-handed 310
Helix 40	AE4	B	461	472	Right-handed alpha
Helix 41	AE5	B	522	540	Right-handed alpha
Helix 42	AE6	B	540	545	Right-handed alpha
Helix 43	AE7	B	559	571	Right-handed alpha
Helix 44	AE8	B	609	613	Right-handed 310
Helix 45	AE9	B	621	637	Right-handed alpha

There are 13 sheets in PDB entry 7R34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	110	113	parallel
Strand 3	A	84	89	parallel
Strand 4	A	327	339	parallel
Strand 5	A	311	318	anti-parallel
Strand 6	A	297	304	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	110	113	parallel
Strand 3	A	84	89	parallel
Strand 4	A	327	339	parallel
Strand 5	A	605	607	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	220	222	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	263	first strand
Strand 2	A	434	438	anti-parallel
Strand 3	A	448	453	anti-parallel
Strand 4	A	482	489	anti-parallel
Strand 5	A	383	390	anti-parallel
Strand 6	A	572	573	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	272	273	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	379	first strand
Strand 2	A	496	499	anti-parallel
Strand 3	A	510	512	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	584	first strand
Strand 2	A	593	594	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	294	first strand
Strand 2	B	110	114	parallel
Strand 3	B	83	89	parallel
Strand 4	B	326	339	parallel
Strand 5	B	312	318	anti-parallel
Strand 6	B	297	303	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	294	first strand
Strand 2	B	110	114	parallel
Strand 3	B	83	89	parallel
Strand 4	B	326	339	parallel
Strand 5	B	605	607	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	220	222	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	263	first strand
Strand 2	B	434	438	anti-parallel
Strand 3	B	448	453	anti-parallel
Strand 4	B	482	489	anti-parallel
Strand 5	B	383	390	anti-parallel
Strand 6	B	572	573	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	272	273	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	379	first strand
Strand 2	B	496	499	anti-parallel
Strand 3	B	510	512	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R34

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R34