Analysis of interatomic Contacts of Structural Units in PDB entry:
7R39

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R39 entry

There are 4 chains in PDB entry 7R39 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	THR 415
B	ARG 4	THR 415
C	ARG 4	THR 415
D	ARG 4	ILE 44

There are163 helices in PDB entry 7R39. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	9	Right-handed 310
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	25	39	Right-handed alpha
Helix 4	AA4	A	53	66	Right-handed alpha
Helix 5	AA5	A	81	91	Right-handed alpha
Helix 6	AA6	A	102	115	Right-handed alpha
Helix 7	AA7	A	126	135	Right-handed alpha
Helix 8	AA8	A	148	161	Right-handed alpha
Helix 9	AA9	A	174	179	Right-handed alpha
Helix 10	AB1	A	183	198	Right-handed alpha
Helix 11	AB2	A	213	226	Right-handed alpha
Helix 12	AB3	A	236	246	Right-handed alpha
Helix 13	AB4	A	252	257	Right-handed alpha
Helix 14	AB5	A	274	280	Right-handed alpha
Helix 15	AB6	A	298	305	Right-handed alpha
Helix 16	AB7	A	332	334	Right-handed 310
Helix 17	AB8	A	335	340	Right-handed alpha
Helix 18	AB9	A	345	366	Right-handed alpha
Helix 19	AC1	A	378	394	Right-handed alpha
Helix 20	AC2	A	401	407	Right-handed alpha
Helix 21	AC3	B	7	9	Right-handed 310
Helix 22	AC4	B	10	24	Right-handed alpha
Helix 23	AC5	B	25	39	Right-handed alpha
Helix 24	AC6	B	53	66	Right-handed alpha
Helix 25	AC7	B	81	91	Right-handed alpha
Helix 26	AC8	B	102	115	Right-handed alpha
Helix 27	AC9	B	126	135	Right-handed alpha
Helix 28	AD1	B	148	161	Right-handed alpha
Helix 29	AD2	B	174	179	Right-handed alpha
Helix 30	AD3	B	183	198	Right-handed alpha
Helix 31	AD4	B	213	226	Right-handed alpha
Helix 32	AD5	B	236	246	Right-handed alpha
Helix 33	AD6	B	252	258	Right-handed alpha
Helix 34	AD7	B	274	281	Right-handed alpha
Helix 35	AD8	B	298	305	Right-handed alpha
Helix 36	AD9	B	332	334	Right-handed 310
Helix 37	AE1	B	335	340	Right-handed alpha
Helix 38	AE2	B	345	366	Right-handed alpha
Helix 39	AE3	B	378	394	Right-handed alpha
Helix 40	AE4	B	401	407	Right-handed alpha
Helix 41	AE5	C	7	9	Right-handed 310
Helix 42	AE6	C	10	24	Right-handed alpha
Helix 43	AE7	C	25	39	Right-handed alpha
Helix 44	AE8	C	53	66	Right-handed alpha
Helix 45	AE9	C	81	91	Right-handed alpha
Helix 46	AF1	C	102	114	Right-handed alpha
Helix 47	AF2	C	115	117	Right-handed 310
Helix 48	AF3	C	126	135	Right-handed alpha
Helix 49	AF4	C	137	141	Right-handed 310
Helix 50	AF5	C	148	161	Right-handed alpha
Helix 51	AF6	C	174	179	Right-handed alpha
Helix 52	AF7	C	183	198	Right-handed alpha
Helix 53	AF8	C	213	226	Right-handed alpha
Helix 54	AF9	C	236	246	Right-handed alpha
Helix 55	AG1	C	252	257	Right-handed alpha
Helix 56	AG2	C	274	280	Right-handed alpha
Helix 57	AG3	C	298	305	Right-handed alpha
Helix 58	AG4	C	332	334	Right-handed 310
Helix 59	AG5	C	335	340	Right-handed alpha
Helix 60	AG6	C	345	366	Right-handed alpha
Helix 61	AG7	C	378	394	Right-handed alpha
Helix 62	AG8	C	401	407	Right-handed alpha
Helix 63	AG9	D	7	9	Right-handed 310
Helix 64	AH1	D	10	24	Right-handed alpha
Helix 65	AH2	D	25	39	Right-handed alpha
Helix 66	AH3	D	53	66	Right-handed alpha
Helix 67	AH4	D	81	91	Right-handed alpha
Helix 68	AH5	D	102	116	Right-handed alpha
Helix 69	AH6	D	126	135	Right-handed alpha
Helix 70	AH7	D	148	161	Right-handed alpha
Helix 71	AH8	D	174	179	Right-handed alpha
Helix 72	AH9	D	183	198	Right-handed alpha
Helix 73	AI1	D	213	226	Right-handed alpha
Helix 74	AI2	D	236	246	Right-handed alpha
Helix 75	AI3	D	252	257	Right-handed alpha
Helix 76	AI4	D	274	280	Right-handed alpha
Helix 77	AI5	D	298	305	Right-handed alpha
Helix 78	AI6	D	332	334	Right-handed 310
Helix 79	AI7	D	335	340	Right-handed alpha
Helix 80	AI8	D	345	366	Right-handed alpha
Helix 81	AI9	D	378	394	Right-handed alpha
Helix 82	AJ1	D	401	407	Right-handed alpha
Helix 83	AJ2	E	7	9	Right-handed 310
Helix 84	AJ3	E	10	24	Right-handed alpha
Helix 85	AJ4	E	25	39	Right-handed alpha
Helix 86	AJ5	E	53	66	Right-handed alpha
Helix 87	AJ6	E	81	91	Right-handed alpha
Helix 88	AJ7	E	102	115	Right-handed alpha
Helix 89	AJ8	E	126	135	Right-handed alpha
Helix 90	AJ9	E	148	161	Right-handed alpha
Helix 91	AK1	E	174	179	Right-handed alpha
Helix 92	AK2	E	183	198	Right-handed alpha
Helix 93	AK3	E	213	226	Right-handed alpha
Helix 94	AK4	E	236	246	Right-handed alpha
Helix 95	AK5	E	252	257	Right-handed alpha
Helix 96	AK6	E	274	280	Right-handed alpha
Helix 97	AK7	E	298	305	Right-handed alpha
Helix 98	AK8	E	332	334	Right-handed 310
Helix 99	AK9	E	335	340	Right-handed alpha
Helix 100	AL1	E	345	366	Right-handed alpha
Helix 101	AL2	E	378	394	Right-handed alpha
Helix 102	AL3	E	401	407	Right-handed alpha
Helix 103	AL4	F	7	9	Right-handed 310
Helix 104	AL5	F	10	24	Right-handed alpha
Helix 105	AL6	F	25	39	Right-handed alpha
Helix 106	AL7	F	53	66	Right-handed alpha
Helix 107	AL8	F	81	91	Right-handed alpha
Helix 108	AL9	F	102	114	Right-handed alpha
Helix 109	AM1	F	126	135	Right-handed alpha
Helix 110	AM2	F	148	161	Right-handed alpha
Helix 111	AM3	F	174	179	Right-handed alpha
Helix 112	AM4	F	183	198	Right-handed alpha
Helix 113	AM5	F	213	226	Right-handed alpha
Helix 114	AM6	F	236	246	Right-handed alpha
Helix 115	AM7	F	252	258	Right-handed alpha
Helix 116	AM8	F	274	280	Right-handed alpha
Helix 117	AM9	F	298	305	Right-handed alpha
Helix 118	AN1	F	332	334	Right-handed 310
Helix 119	AN2	F	335	341	Right-handed alpha
Helix 120	AN3	F	345	366	Right-handed alpha
Helix 121	AN4	F	378	394	Right-handed alpha
Helix 122	AN5	F	401	407	Right-handed alpha
Helix 123	AN6	G	7	9	Right-handed 310
Helix 124	AN7	G	10	24	Right-handed alpha
Helix 125	AN8	G	25	39	Right-handed alpha
Helix 126	AN9	G	53	66	Right-handed alpha
Helix 127	AO1	G	81	91	Right-handed alpha
Helix 128	AO2	G	102	114	Right-handed alpha
Helix 129	AO3	G	115	117	Right-handed 310
Helix 130	AO4	G	126	135	Right-handed alpha
Helix 131	AO5	G	148	161	Right-handed alpha
Helix 132	AO6	G	174	179	Right-handed alpha
Helix 133	AO7	G	183	198	Right-handed alpha
Helix 134	AO8	G	213	226	Right-handed alpha
Helix 135	AO9	G	236	246	Right-handed alpha
Helix 136	AP1	G	252	257	Right-handed alpha
Helix 137	AP2	G	274	280	Right-handed alpha
Helix 138	AP3	G	298	305	Right-handed alpha
Helix 139	AP4	G	332	334	Right-handed 310
Helix 140	AP5	G	335	340	Right-handed alpha
Helix 141	AP6	G	345	366	Right-handed alpha
Helix 142	AP7	G	378	394	Right-handed alpha
Helix 143	AP8	G	401	407	Right-handed alpha
Helix 144	AP9	H	7	9	Right-handed 310
Helix 145	AQ1	H	10	24	Right-handed alpha
Helix 146	AQ2	H	25	39	Right-handed alpha
Helix 147	AQ3	H	53	66	Right-handed alpha
Helix 148	AQ4	H	81	91	Right-handed alpha
Helix 149	AQ5	H	102	115	Right-handed alpha
Helix 150	AQ6	H	126	135	Right-handed alpha
Helix 151	AQ7	H	148	161	Right-handed alpha
Helix 152	AQ8	H	174	179	Right-handed alpha
Helix 153	AQ9	H	183	198	Right-handed alpha
Helix 154	AR1	H	213	226	Right-handed alpha
Helix 155	AR2	H	236	246	Right-handed alpha
Helix 156	AR3	H	252	258	Right-handed alpha
Helix 157	AR4	H	274	280	Right-handed alpha
Helix 158	AR5	H	298	305	Right-handed alpha
Helix 159	AR6	H	332	334	Right-handed 310
Helix 160	AR7	H	335	341	Right-handed alpha
Helix 161	AR8	H	345	366	Right-handed alpha
Helix 162	AR9	H	378	393	Right-handed alpha
Helix 163	AS1	H	401	407	Right-handed alpha

There are 16 sheets in PDB entry 7R39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	68	74	parallel
Strand 3	A	44	50	parallel
Strand 4	A	120	123	parallel
Strand 5	A	143	146	parallel
Strand 6	A	168	170	parallel
Strand 7	A	374	376	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	229	233	parallel
Strand 3	A	206	210	parallel
Strand 4	A	262	265	parallel
Strand 5	A	285	289	parallel
Strand 6	A	326	330	parallel
Strand 7	A	316	321	anti-parallel
Strand 8	A	306	313	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	69	74	parallel
Strand 3	B	45	50	parallel
Strand 4	B	120	123	parallel
Strand 5	B	143	146	parallel
Strand 6	B	168	170	parallel
Strand 7	B	374	376	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	229	233	parallel
Strand 3	B	206	210	parallel
Strand 4	B	262	265	parallel
Strand 5	B	286	289	parallel
Strand 6	B	326	330	parallel
Strand 7	B	316	321	anti-parallel
Strand 8	B	306	313	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	68	74	parallel
Strand 3	C	44	50	parallel
Strand 4	C	120	123	parallel
Strand 5	C	143	146	parallel
Strand 6	C	168	170	parallel
Strand 7	C	374	376	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	229	233	parallel
Strand 3	C	206	210	parallel
Strand 4	C	262	265	parallel
Strand 5	C	286	289	parallel
Strand 6	C	326	330	parallel
Strand 7	C	316	321	anti-parallel
Strand 8	C	306	313	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	68	74	parallel
Strand 3	D	44	50	parallel
Strand 4	D	120	123	parallel
Strand 5	D	143	146	parallel
Strand 6	D	168	170	parallel
Strand 7	D	374	376	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	229	233	parallel
Strand 3	D	206	210	parallel
Strand 4	D	262	265	parallel
Strand 5	D	286	289	parallel
Strand 6	D	326	330	parallel
Strand 7	D	316	321	anti-parallel
Strand 8	D	306	313	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	68	74	parallel
Strand 3	E	44	50	parallel
Strand 4	E	120	123	parallel
Strand 5	E	143	146	parallel
Strand 6	E	168	170	parallel
Strand 7	E	374	376	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	250	first strand
Strand 2	E	229	233	parallel
Strand 3	E	206	210	parallel
Strand 4	E	262	265	parallel
Strand 5	E	285	289	parallel
Strand 6	E	326	330	parallel
Strand 7	E	316	321	anti-parallel
Strand 8	E	306	313	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	68	74	parallel
Strand 3	F	44	50	parallel
Strand 4	F	120	123	parallel
Strand 5	F	143	146	parallel
Strand 6	F	168	170	parallel
Strand 7	F	374	376	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	250	first strand
Strand 2	F	229	233	parallel
Strand 3	F	206	210	parallel
Strand 4	F	262	265	parallel
Strand 5	F	285	289	parallel
Strand 6	F	326	330	parallel
Strand 7	F	316	321	anti-parallel
Strand 8	F	306	313	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	96	first strand
Strand 2	G	69	74	parallel
Strand 3	G	45	50	parallel
Strand 4	G	120	123	parallel
Strand 5	G	143	146	parallel
Strand 6	G	168	170	parallel
Strand 7	G	374	376	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	249	250	first strand
Strand 2	G	229	233	parallel
Strand 3	G	206	210	parallel
Strand 4	G	262	265	parallel
Strand 5	G	286	289	parallel
Strand 6	G	326	330	parallel
Strand 7	G	316	321	anti-parallel
Strand 8	G	306	313	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	96	first strand
Strand 2	H	68	74	parallel
Strand 3	H	44	50	parallel
Strand 4	H	120	123	parallel
Strand 5	H	143	146	parallel
Strand 6	H	168	170	parallel
Strand 7	H	374	376	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	249	250	first strand
Strand 2	H	229	233	parallel
Strand 3	H	206	210	parallel
Strand 4	H	262	265	parallel
Strand 5	H	285	289	parallel
Strand 6	H	326	330	parallel
Strand 7	H	316	321	anti-parallel
Strand 8	H	306	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R39

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R39