Analysis of interatomic Contacts of Structural Units in PDB entry:
7R54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R54 entry

There are 2 chains in PDB entry 7R54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 31GLU 818
B
 SER 31ILE 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7R54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
238 243Right-handed 310
Helix 2
AA2
A
303 308Right-handed 310
Helix 3
AA3
A
323 330Right-handed alpha
Helix 4
AA4
A
331 336Right-handed 310
Helix 5
AA5
A
360 366Right-handed 310
Helix 6
AA6
A
383 391Right-handed 310
Helix 7
AA7
A
411 416Right-handed 310
Helix 8
AA8
A
476 481Right-handed alpha
Helix 9
AA9
A
579 583Right-handed 310
Helix 10
AB1
A
619 624Right-handed alpha
Helix 11
AB2
A
655 661Right-handed alpha
Helix 12
AB3
A
680 687Right-handed 310
Helix 13
AB4
A
706 711Right-handed alpha
Helix 14
AB5
A
752 757Right-handed 310
Helix 15
AB6
A
780 790Right-handed alpha
Helix 16
AB7
A
806 810Right-handed 310
Helix 17
AB8
B
238 243Right-handed 310
Helix 18
AB9
B
303 308Right-handed 310
Helix 19
AC1
B
323 330Right-handed alpha
Helix 20
AC2
B
331 336Right-handed 310
Helix 21
AC3
B
360 366Right-handed 310
Helix 22
AC4
B
383 391Right-handed 310
Helix 23
AC5
B
411 415Right-handed 310
Helix 24
AC6
B
476 481Right-handed alpha
Helix 25
AC7
B
577 583Right-handed 310
Helix 26
AC8
B
619 624Right-handed alpha
Helix 27
AC9
B
655 661Right-handed alpha
Helix 28
AD1
B
680 687Right-handed 310
Helix 29
AD2
B
706 711Right-handed alpha
Helix 30
AD3
B
752 757Right-handed 310
Helix 31
AD4
B
780 790Right-handed alpha
Helix 32
AD5
B
797 801Right-handed 310
Helix 33
AD6
B
806 810Right-handed 310
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There are 12 sheets in PDB entry 7R54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 28 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
65 69parallel
Strand 4
A
91 93parallel
Strand 5
A
129 131parallel
Strand 6
A
150 152parallel
Strand 7
A
174 176parallel
Strand 8
A
205 207parallel
Strand 9
A
226 228parallel
Strand 10
A
250 252parallel
Strand 11
A
291 293parallel
Strand 12
A
315 317parallel
Strand 13
A
341 343parallel
Strand 14
A
371 373parallel
Strand 15
A
398 400parallel
Strand 16
A
422 424parallel
Strand 17
A
484 487parallel
Strand 18
A
507 511parallel
Strand 19
A
534 536parallel
Strand 20
A
558 560parallel
Strand 21
A
588 590parallel
Strand 22
A
612 614parallel
Strand 23
A
643 645parallel
Strand 24
A
668 670parallel
Strand 25
A
692 694parallel
Strand 26
A
716 718parallel
Strand 27
A
740 742parallel
Strand 28
A
766 768parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
115 116parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
191 192parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
277 278parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
408 409parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
774 775first strand
Strand 2
A
803 805parallel
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There are 28 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
67 69parallel
Strand 4
B
91 93parallel
Strand 5
B
129 131parallel
Strand 6
B
150 152parallel
Strand 7
B
174 176parallel
Strand 8
B
205 207parallel
Strand 9
B
226 228parallel
Strand 10
B
250 252parallel
Strand 11
B
291 293parallel
Strand 12
B
315 317parallel
Strand 13
B
341 343parallel
Strand 14
B
371 373parallel
Strand 15
B
398 400parallel
Strand 16
B
422 424parallel
Strand 17
B
484 487parallel
Strand 18
B
507 511parallel
Strand 19
B
534 536parallel
Strand 20
B
558 560parallel
Strand 21
B
588 590parallel
Strand 22
B
612 614parallel
Strand 23
B
643 645parallel
Strand 24
B
668 670parallel
Strand 25
B
692 694parallel
Strand 26
B
716 718parallel
Strand 27
B
740 742parallel
Strand 28
B
766 768parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
115 116parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
191 192parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
277 278parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 382first strand
Strand 2
B
408 409parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
774 775first strand
Strand 2
B
803 805parallel
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