Analysis of interatomic Contacts of Structural Units in PDB entry:
7R5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R5Y entry

There are 4 chains in PDB entry 7R5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 21	GLY 429
B	GLN 21	ASP 427
C	GLN 21	SER 428
D	GLN 21	LYS 37

There are142 helices in PDB entry 7R5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	30	Right-handed alpha
Helix 2	AA2	A	31	39	Right-handed 310
Helix 3	AA3	A	74	91	Right-handed alpha
Helix 4	AA4	A	95	113	Right-handed alpha
Helix 5	AA5	A	120	138	Right-handed alpha
Helix 6	AA6	A	139	142	Right-handed 310
Helix 7	AA7	A	155	173	Right-handed alpha
Helix 8	AA8	A	183	185	Right-handed 310
Helix 9	AA9	A	186	191	Right-handed alpha
Helix 10	AB1	A	194	202	Right-handed alpha
Helix 11	AB2	A	204	217	Right-handed alpha
Helix 12	AB3	A	219	227	Right-handed alpha
Helix 13	AB4	A	232	237	Right-handed alpha
Helix 14	AB5	A	239	254	Right-handed alpha
Helix 15	AB6	A	255	257	Right-handed 310
Helix 16	AB7	A	263	267	Right-handed 310
Helix 17	AB8	A	268	288	Right-handed alpha
Helix 18	AB9	A	290	294	Right-handed 310
Helix 19	AC1	A	296	300	Right-handed 310
Helix 20	AC2	A	301	318	Right-handed alpha
Helix 21	AC3	A	329	340	Right-handed alpha
Helix 22	AC4	A	354	359	Right-handed alpha
Helix 23	AC5	A	360	364	Right-handed 310
Helix 24	AC6	A	409	422	Right-handed alpha
Helix 25	AC7	B	22	30	Right-handed alpha
Helix 26	AC8	B	31	39	Right-handed 310
Helix 27	AC9	B	75	91	Right-handed alpha
Helix 28	AD1	B	95	113	Right-handed alpha
Helix 29	AD2	B	120	138	Right-handed alpha
Helix 30	AD3	B	139	142	Right-handed 310
Helix 31	AD4	B	155	173	Right-handed alpha
Helix 32	AD5	B	183	185	Right-handed 310
Helix 33	AD6	B	186	191	Right-handed alpha
Helix 34	AD7	B	194	202	Right-handed alpha
Helix 35	AD8	B	204	217	Right-handed alpha
Helix 36	AD9	B	219	227	Right-handed alpha
Helix 37	AE1	B	232	237	Right-handed alpha
Helix 38	AE2	B	239	254	Right-handed alpha
Helix 39	AE3	B	255	257	Right-handed 310
Helix 40	AE4	B	263	267	Right-handed 310
Helix 41	AE5	B	268	288	Right-handed alpha
Helix 42	AE6	B	290	294	Right-handed 310
Helix 43	AE7	B	296	300	Right-handed 310
Helix 44	AE8	B	301	318	Right-handed alpha
Helix 45	AE9	B	329	340	Right-handed alpha
Helix 46	AF1	B	354	359	Right-handed alpha
Helix 47	AF2	B	360	365	Right-handed alpha
Helix 48	AF3	B	409	422	Right-handed alpha
Helix 49	AF4	C	22	30	Right-handed alpha
Helix 50	AF5	C	31	39	Right-handed 310
Helix 51	AF6	C	75	91	Right-handed alpha
Helix 52	AF7	C	95	113	Right-handed alpha
Helix 53	AF8	C	120	138	Right-handed alpha
Helix 54	AF9	C	139	142	Right-handed 310
Helix 55	AG1	C	155	173	Right-handed alpha
Helix 56	AG2	C	183	185	Right-handed 310
Helix 57	AG3	C	186	191	Right-handed alpha
Helix 58	AG4	C	194	202	Right-handed alpha
Helix 59	AG5	C	204	217	Right-handed alpha
Helix 60	AG6	C	219	227	Right-handed alpha
Helix 61	AG7	C	232	237	Right-handed alpha
Helix 62	AG8	C	239	254	Right-handed alpha
Helix 63	AG9	C	255	257	Right-handed 310
Helix 64	AH1	C	263	267	Right-handed 310
Helix 65	AH2	C	268	288	Right-handed alpha
Helix 66	AH3	C	290	294	Right-handed 310
Helix 67	AH4	C	296	300	Right-handed 310
Helix 68	AH5	C	301	318	Right-handed alpha
Helix 69	AH6	C	329	341	Right-handed alpha
Helix 70	AH7	C	354	359	Right-handed alpha
Helix 71	AH8	C	360	365	Right-handed alpha
Helix 72	AH9	C	409	423	Right-handed alpha
Helix 73	AI1	D	22	30	Right-handed alpha
Helix 74	AI2	D	31	39	Right-handed 310
Helix 75	AI3	D	75	91	Right-handed alpha
Helix 76	AI4	D	95	113	Right-handed alpha
Helix 77	AI5	D	120	138	Right-handed alpha
Helix 78	AI6	D	155	173	Right-handed alpha
Helix 79	AI7	D	183	185	Right-handed 310
Helix 80	AI8	D	186	191	Right-handed alpha
Helix 81	AI9	D	194	202	Right-handed alpha
Helix 82	AJ1	D	204	217	Right-handed alpha
Helix 83	AJ2	D	219	227	Right-handed alpha
Helix 84	AJ3	D	232	237	Right-handed alpha
Helix 85	AJ4	D	239	254	Right-handed alpha
Helix 86	AJ5	D	255	257	Right-handed 310
Helix 87	AJ6	D	263	267	Right-handed 310
Helix 88	AJ7	D	268	288	Right-handed alpha
Helix 89	AJ8	D	290	294	Right-handed 310
Helix 90	AJ9	D	296	300	Right-handed 310
Helix 91	AK1	D	301	318	Right-handed alpha
Helix 92	AK2	D	329	340	Right-handed alpha
Helix 93	AK3	D	354	359	Right-handed alpha
Helix 94	AK4	D	360	365	Right-handed alpha
Helix 95	AK5	D	409	423	Right-handed alpha
Helix 96	AK6	E	22	30	Right-handed alpha
Helix 97	AK7	E	31	39	Right-handed 310
Helix 98	AK8	E	74	91	Right-handed alpha
Helix 99	AK9	E	95	113	Right-handed alpha
Helix 100	AL1	E	120	138	Right-handed alpha
Helix 101	AL2	E	155	173	Right-handed alpha
Helix 102	AL3	E	183	185	Right-handed 310
Helix 103	AL4	E	186	191	Right-handed alpha
Helix 104	AL5	E	194	202	Right-handed alpha
Helix 105	AL6	E	204	217	Right-handed alpha
Helix 106	AL7	E	219	227	Right-handed alpha
Helix 107	AL8	E	232	237	Right-handed alpha
Helix 108	AL9	E	239	254	Right-handed alpha
Helix 109	AM1	E	255	257	Right-handed 310
Helix 110	AM2	E	263	267	Right-handed 310
Helix 111	AM3	E	268	288	Right-handed alpha
Helix 112	AM4	E	290	294	Right-handed 310
Helix 113	AM5	E	296	300	Right-handed 310
Helix 114	AM6	E	301	317	Right-handed alpha
Helix 115	AM7	E	329	340	Right-handed alpha
Helix 116	AM8	E	354	359	Right-handed alpha
Helix 117	AM9	E	360	364	Right-handed 310
Helix 118	AN1	E	409	423	Right-handed alpha
Helix 119	AN2	F	22	30	Right-handed alpha
Helix 120	AN3	F	31	39	Right-handed 310
Helix 121	AN4	F	74	91	Right-handed alpha
Helix 122	AN5	F	95	113	Right-handed alpha
Helix 123	AN6	F	120	138	Right-handed alpha
Helix 124	AN7	F	139	142	Right-handed 310
Helix 125	AN8	F	155	173	Right-handed alpha
Helix 126	AN9	F	183	185	Right-handed 310
Helix 127	AO1	F	186	191	Right-handed alpha
Helix 128	AO2	F	194	203	Right-handed alpha
Helix 129	AO3	F	204	217	Right-handed alpha
Helix 130	AO4	F	219	227	Right-handed alpha
Helix 131	AO5	F	232	237	Right-handed alpha
Helix 132	AO6	F	239	254	Right-handed alpha
Helix 133	AO7	F	255	257	Right-handed 310
Helix 134	AO8	F	263	267	Right-handed 310
Helix 135	AO9	F	268	288	Right-handed alpha
Helix 136	AP1	F	290	294	Right-handed 310
Helix 137	AP2	F	296	300	Right-handed 310
Helix 138	AP3	F	301	318	Right-handed alpha
Helix 139	AP4	F	329	341	Right-handed alpha
Helix 140	AP5	F	354	359	Right-handed alpha
Helix 141	AP6	F	360	365	Right-handed alpha
Helix 142	AP7	F	409	422	Right-handed alpha

There are 12 sheets in PDB entry 7R5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	147	152	parallel
Strand 3	A	322	328	parallel
Strand 4	A	56	66	parallel
Strand 5	A	370	378	anti-parallel
Strand 6	A	385	390	anti-parallel
Strand 7	A	393	394	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	147	152	parallel
Strand 3	A	322	328	parallel
Strand 4	A	56	66	parallel
Strand 5	A	370	378	anti-parallel
Strand 6	A	385	390	anti-parallel
Strand 7	A	407	408	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	181	first strand
Strand 2	B	147	152	parallel
Strand 3	B	322	328	parallel
Strand 4	B	56	66	parallel
Strand 5	B	370	378	anti-parallel
Strand 6	B	385	390	anti-parallel
Strand 7	B	393	394	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	181	first strand
Strand 2	B	147	152	parallel
Strand 3	B	322	328	parallel
Strand 4	B	56	66	parallel
Strand 5	B	370	378	anti-parallel
Strand 6	B	385	390	anti-parallel
Strand 7	B	407	408	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	181	first strand
Strand 2	C	147	152	parallel
Strand 3	C	322	328	parallel
Strand 4	C	56	66	parallel
Strand 5	C	370	378	anti-parallel
Strand 6	C	385	390	anti-parallel
Strand 7	C	393	394	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	181	first strand
Strand 2	C	147	152	parallel
Strand 3	C	322	328	parallel
Strand 4	C	56	66	parallel
Strand 5	C	370	378	anti-parallel
Strand 6	C	385	390	anti-parallel
Strand 7	C	407	408	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	181	first strand
Strand 2	D	147	152	parallel
Strand 3	D	322	328	parallel
Strand 4	D	56	66	parallel
Strand 5	D	370	378	anti-parallel
Strand 6	D	385	390	anti-parallel
Strand 7	D	393	394	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	181	first strand
Strand 2	D	147	152	parallel
Strand 3	D	322	328	parallel
Strand 4	D	56	66	parallel
Strand 5	D	370	378	anti-parallel
Strand 6	D	385	390	anti-parallel
Strand 7	D	407	408	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	181	first strand
Strand 2	E	147	152	parallel
Strand 3	E	322	328	parallel
Strand 4	E	57	66	parallel
Strand 5	E	370	378	anti-parallel
Strand 6	E	381	390	anti-parallel
Strand 7	E	393	394	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	181	first strand
Strand 2	E	147	152	parallel
Strand 3	E	322	328	parallel
Strand 4	E	57	66	parallel
Strand 5	E	370	378	anti-parallel
Strand 6	E	381	390	anti-parallel
Strand 7	E	407	408	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	181	first strand
Strand 2	F	147	152	parallel
Strand 3	F	322	328	parallel
Strand 4	F	56	66	parallel
Strand 5	F	370	378	anti-parallel
Strand 6	F	385	390	anti-parallel
Strand 7	F	393	394	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	181	first strand
Strand 2	F	147	152	parallel
Strand 3	F	322	328	parallel
Strand 4	F	56	66	parallel
Strand 5	F	370	378	anti-parallel
Strand 6	F	385	390	anti-parallel
Strand 7	F	407	408	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R5Y