Analysis of interatomic Contacts of Structural Units in PDB entry:
7R69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R69 entry

There are 4 chains in PDB entry 7R69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	THR 337
B	LYS 3	THR 337
C	GLN 2	THR 337
D	LYS 4	THR 337

There are 54 helices in PDB entry 7R69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	29	37	Right-handed alpha
Helix 3	AA3	A	38	43	Right-handed 310
Helix 4	AA4	A	59	63	Right-handed 310
Helix 5	AA5	A	64	79	Right-handed alpha
Helix 6	AA6	A	93	104	Right-handed alpha
Helix 7	AA7	A	126	142	Right-handed alpha
Helix 8	AA8	A	159	161	Right-handed 310
Helix 9	AA9	A	222	230	Right-handed alpha
Helix 10	AB1	A	250	263	Right-handed alpha
Helix 11	AB2	A	282	286	Right-handed 310
Helix 12	AB3	A	287	292	Right-handed alpha
Helix 13	AB4	A	301	314	Right-handed alpha
Helix 14	AB5	A	318	328	Right-handed alpha
Helix 15	AB6	B	13	17	Right-handed 310
Helix 16	AB7	B	29	37	Right-handed alpha
Helix 17	AB8	B	38	43	Right-handed 310
Helix 18	AB9	B	59	63	Right-handed 310
Helix 19	AC1	B	64	79	Right-handed alpha
Helix 20	AC2	B	80	82	Right-handed 310
Helix 21	AC3	B	93	105	Right-handed alpha
Helix 22	AC4	B	126	142	Right-handed alpha
Helix 23	AC5	B	159	161	Right-handed 310
Helix 24	AC6	B	222	230	Right-handed alpha
Helix 25	AC7	B	250	263	Right-handed alpha
Helix 26	AC8	B	287	292	Right-handed alpha
Helix 27	AC9	B	301	314	Right-handed alpha
Helix 28	AD1	B	318	328	Right-handed alpha
Helix 29	AD2	C	13	17	Right-handed 310
Helix 30	AD3	C	29	37	Right-handed alpha
Helix 31	AD4	C	38	43	Right-handed 310
Helix 32	AD5	C	59	63	Right-handed 310
Helix 33	AD6	C	64	79	Right-handed alpha
Helix 34	AD7	C	93	104	Right-handed alpha
Helix 35	AD8	C	126	142	Right-handed alpha
Helix 36	AD9	C	159	161	Right-handed 310
Helix 37	AE1	C	222	231	Right-handed alpha
Helix 38	AE2	C	250	263	Right-handed alpha
Helix 39	AE3	C	288	292	Right-handed alpha
Helix 40	AE4	C	301	314	Right-handed alpha
Helix 41	AE5	C	318	328	Right-handed alpha
Helix 42	AE6	D	13	17	Right-handed 310
Helix 43	AE7	D	29	36	Right-handed alpha
Helix 44	AE8	D	37	43	Right-handed 310
Helix 45	AE9	D	59	63	Right-handed 310
Helix 46	AF1	D	64	79	Right-handed alpha
Helix 47	AF2	D	93	104	Right-handed alpha
Helix 48	AF3	D	126	142	Right-handed alpha
Helix 49	AF4	D	159	161	Right-handed 310
Helix 50	AF5	D	222	230	Right-handed alpha
Helix 51	AF6	D	250	263	Right-handed alpha
Helix 52	AF7	D	288	292	Right-handed alpha
Helix 53	AF8	D	301	314	Right-handed alpha
Helix 54	AF9	D	318	328	Right-handed alpha

There are 15 sheets in PDB entry 7R69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	5	10	parallel
Strand 3	A	84	88	parallel
Strand 4	A	112	115	parallel
Strand 5	A	147	151	parallel
Strand 6	A	154	157	anti-parallel
Strand 7	A	181	182	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	203	204	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	172	173	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	236	241	parallel
Strand 3	A	266	271	parallel
Strand 4	A	295	296	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	5	10	parallel
Strand 3	B	84	88	parallel
Strand 4	B	112	115	parallel
Strand 5	B	147	151	parallel
Strand 6	B	154	157	anti-parallel
Strand 7	B	181	182	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	172	173	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	236	241	parallel
Strand 3	B	266	271	parallel
Strand 4	B	295	296	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	53	first strand
Strand 2	C	5	10	parallel
Strand 3	C	84	88	parallel
Strand 4	C	112	115	parallel
Strand 5	C	147	151	parallel
Strand 6	C	154	157	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	203	204	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	172	173	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	216	first strand
Strand 2	C	236	241	parallel
Strand 3	C	266	271	parallel
Strand 4	C	295	296	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	53	first strand
Strand 2	D	5	10	parallel
Strand 3	D	84	88	parallel
Strand 4	D	112	115	parallel
Strand 5	D	147	151	parallel
Strand 6	D	154	157	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	203	204	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	172	173	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	216	first strand
Strand 2	D	236	241	parallel
Strand 3	D	266	271	parallel
Strand 4	D	295	296	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R69

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R69