Analysis of interatomic Contacts of Structural Units in PDB entry:
7R6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R6W entry

There are 5 chains in PDB entry 7R6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 1	GLU 213
A	GLN 1	LYS 228
L	SER 2	THR 216
H	GLN 1	SER 230
R	THR 333	PRO 527

There are 29 helices in PDB entry 7R6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	30	32	Right-handed 310
Helix 2	AA2	B	80	84	Right-handed 310
Helix 3	AA3	B	121	127	Right-handed alpha
Helix 4	AA4	B	183	187	Right-handed alpha
Helix 5	AA5	A	28	32	Right-handed 310
Helix 6	AA6	A	62	65	Right-handed 310
Helix 7	AA7	A	87	91	Right-handed 310
Helix 8	AA8	A	170	172	Right-handed 310
Helix 9	AA9	A	201	203	Right-handed 310
Helix 10	AB1	A	215	218	Right-handed 310
Helix 11	AB2	L	28	32	Right-handed 310
Helix 12	AB3	L	81	85	Right-handed 310
Helix 13	AB4	L	128	134	Right-handed alpha
Helix 14	AB5	L	188	195	Right-handed alpha
Helix 15	AB6	H	28	31	Right-handed 310
Helix 16	AB7	H	62	65	Right-handed 310
Helix 17	AB8	H	74	76	Right-handed 310
Helix 18	AB9	H	87	91	Right-handed 310
Helix 19	AC1	H	171	173	Right-handed 310
Helix 20	AC2	H	202	204	Right-handed 310
Helix 21	AC3	H	216	219	Right-handed 310
Helix 22	AC4	R	337	343	Right-handed alpha
Helix 23	AC5	R	349	353	Right-handed 310
Helix 24	AC6	R	365	370	Right-handed alpha
Helix 25	AC7	R	383	389	Right-handed 310
Helix 26	AC8	R	405	410	Right-handed 310
Helix 27	AC9	R	416	422	Right-handed alpha
Helix 28	AD1	R	438	443	Right-handed alpha
Helix 29	AD2	R	502	505	Right-handed 310

There are 27 sheets in PDB entry 7R6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	63	68	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	50	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	163	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	191	197	anti-parallel
Strand 4	B	205	210	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	121	125	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	121	125	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	114	115	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	149	159	anti-parallel
Strand 3	A	190	199	anti-parallel
Strand 4	A	177	179	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	149	159	anti-parallel
Strand 3	A	190	199	anti-parallel
Strand 4	A	183	184	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	209	214	anti-parallel
Strand 3	A	219	224	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	108	112	parallel
Strand 3	L	86	96	anti-parallel
Strand 4	L	36	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	108	112	parallel
Strand 3	L	86	96	anti-parallel
Strand 4	L	99	104	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	125	first strand
Strand 2	L	137	146	anti-parallel
Strand 3	L	179	187	anti-parallel
Strand 4	L	166	168	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	125	first strand
Strand 2	L	137	146	anti-parallel
Strand 3	L	179	187	anti-parallel
Strand 4	L	172	173	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	160	161	first strand
Strand 2	L	152	157	anti-parallel
Strand 3	L	198	204	anti-parallel
Strand 4	L	207	213	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	115	118	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	107	first strand
Strand 2	R	376	380	anti-parallel
Strand 3	R	431	437	anti-parallel
Strand 4	R	507	516	anti-parallel
Strand 5	R	394	403	anti-parallel
Strand 6	R	354	358	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	142	first strand
Strand 2	H	150	160	anti-parallel
Strand 3	H	191	200	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	142	first strand
Strand 2	H	150	160	anti-parallel
Strand 3	H	191	200	anti-parallel
Strand 4	H	184	185	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	169	first strand
Strand 2	H	210	215	anti-parallel
Strand 3	H	220	225	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	361	362	first strand
Strand 2	R	524	525	parallel
Strand 3	R	391	392	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	452	454	first strand
Strand 2	R	492	494	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	473	474	first strand
Strand 2	R	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R6W