Analysis of interatomic Contacts of Structural Units in PDB entry:
7R72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7R72 entry

There are 24 chains in PDB entry 7R72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	A 820	A 3372
2	G 42	U 153
8	LYS 3	SER 60
B	PHE 379	LEU 387
G	LEU 46	ILE 64
I	THR 130	SER 540
P	ARG 23	PRO 143
R	ALA 2	ARG 162
U	ILE 11	PRO 112
X	LYS 21	ARG 138
Z	ALA 2	PHE 136
b	ILE 489	ASP 541
c	SER 9	ALA 105
d	GLU 11	ALA 101
g	ALA 2	LYS 113
j	LYS 14	PRO 40
k	ALA 2	LEU 78
m	ASP 319	THR 807
n	ARG 2	ASN 583
p	PRO 93	ASN 456
t	LEU 12	ALA 37
u	ARG 44	GLU 138
w	THR 347	LYS 734
x	SER 4	ILE 560

There are109 helices in PDB entry 7R72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	8	5	15	Right-handed alpha
Helix 2	AA2	8	15	35	Right-handed alpha
Helix 3	AA3	8	41	50	Right-handed alpha
Helix 4	AA4	8	51	60	Right-handed alpha
Helix 5	AA5	G	47	52	Right-handed 310
Helix 6	AA6	G	53	62	Right-handed alpha
Helix 7	AA7	I	131	150	Right-handed alpha
Helix 8	AA8	I	155	165	Right-handed alpha
Helix 9	AA9	I	170	189	Right-handed alpha
Helix 10	AB1	I	198	203	Right-handed alpha
Helix 11	AB2	I	209	236	Right-handed alpha
Helix 12	AB3	I	242	261	Right-handed alpha
Helix 13	AB4	I	268	281	Right-handed alpha
Helix 14	AB5	I	290	304	Right-handed alpha
Helix 15	AB6	I	308	325	Right-handed alpha
Helix 16	AB7	I	330	335	Right-handed alpha
Helix 17	AB8	I	336	344	Right-handed 310
Helix 18	AB9	I	362	366	Right-handed 310
Helix 19	AC1	I	370	421	Right-handed alpha
Helix 20	AC2	I	425	437	Right-handed alpha
Helix 21	AC3	I	438	440	Right-handed 310
Helix 22	AC4	P	25	32	Right-handed alpha
Helix 23	AC5	P	84	90	Right-handed alpha
Helix 24	AC6	R	4	16	Right-handed alpha
Helix 25	AC7	R	28	34	Right-handed alpha
Helix 26	AC8	R	37	47	Right-handed alpha
Helix 27	AC9	R	90	112	Right-handed alpha
Helix 28	AD1	R	116	129	Right-handed alpha
Helix 29	AD2	R	134	162	Right-handed alpha
Helix 30	AD3	U	19	25	Right-handed alpha
Helix 31	AD4	U	29	41	Right-handed alpha
Helix 32	AD5	U	42	46	Right-handed 310
Helix 33	AD6	U	72	87	Right-handed alpha
Helix 34	AD7	X	58	62	Right-handed alpha
Helix 35	AD8	X	69	80	Right-handed alpha
Helix 36	AD9	X	91	104	Right-handed alpha
Helix 37	AE1	X	131	138	Right-handed alpha
Helix 38	AE2	Z	59	66	Right-handed alpha
Helix 39	AE3	Z	99	102	Right-handed 310
Helix 40	AE4	Z	103	124	Right-handed alpha
Helix 41	AE5	b	490	511	Right-handed alpha
Helix 42	AE6	b	527	539	Right-handed alpha
Helix 43	AE7	c	10	21	Right-handed alpha
Helix 44	AE8	c	26	36	Right-handed alpha
Helix 45	AE9	c	49	64	Right-handed alpha
Helix 46	AF1	c	73	82	Right-handed alpha
Helix 47	AF2	d	16	20	Right-handed alpha
Helix 48	AF3	d	27	44	Right-handed alpha
Helix 49	AF4	d	52	60	Right-handed alpha
Helix 50	AF5	g	58	65	Right-handed 310
Helix 51	AF6	g	66	70	Right-handed 310
Helix 52	AF7	g	81	111	Right-handed alpha
Helix 53	AF8	k	7	16	Right-handed alpha
Helix 54	AF9	k	58	68	Right-handed alpha
Helix 55	AG1	m	393	397	Right-handed alpha
Helix 56	AG2	m	408	413	Right-handed 310
Helix 57	AG3	m	418	422	Right-handed 310
Helix 58	AG4	m	519	532	Right-handed alpha
Helix 59	AG5	m	533	538	Right-handed 310
Helix 60	AG6	m	579	584	Right-handed alpha
Helix 61	AG7	m	616	619	Right-handed 310
Helix 62	AG8	n	10	15	Right-handed alpha
Helix 63	AG9	n	17	26	Right-handed alpha
Helix 64	AH1	n	28	40	Right-handed alpha
Helix 65	AH2	n	48	53	Right-handed alpha
Helix 66	AH3	n	64	69	Right-handed alpha
Helix 67	AH4	n	551	556	Right-handed alpha
Helix 68	AH5	n	557	559	Right-handed 310
Helix 69	AH6	n	560	583	Right-handed alpha
Helix 70	AH7	p	237	241	Right-handed 310
Helix 71	AH8	p	245	252	Right-handed alpha
Helix 72	AH9	p	258	267	Right-handed alpha
Helix 73	AI1	t	25	37	Right-handed alpha
Helix 74	AI2	u	52	58	Right-handed alpha
Helix 75	AI3	u	105	112	Right-handed alpha
Helix 76	AI4	u	114	129	Right-handed alpha
Helix 77	AI5	u	130	138	Right-handed alpha
Helix 78	AI6	w	348	388	Right-handed alpha
Helix 79	AI7	w	409	416	Right-handed alpha
Helix 80	AI8	w	418	424	Right-handed alpha
Helix 81	AI9	w	455	479	Right-handed alpha
Helix 82	AJ1	w	481	490	Right-handed alpha
Helix 83	AJ2	w	552	560	Right-handed alpha
Helix 84	AJ3	w	638	652	Right-handed alpha
Helix 85	AJ4	w	696	701	Right-handed alpha
Helix 86	AJ5	x	15	26	Right-handed alpha
Helix 87	AJ6	x	31	42	Right-handed alpha
Helix 88	AJ7	x	56	72	Right-handed alpha
Helix 89	AJ8	x	92	108	Right-handed alpha
Helix 90	AJ9	x	129	141	Right-handed alpha
Helix 91	AK1	x	148	158	Right-handed alpha
Helix 92	AK2	x	173	178	Right-handed alpha
Helix 93	AK3	x	182	193	Right-handed alpha
Helix 94	AK4	x	211	217	Right-handed 310
Helix 95	AK5	x	244	246	Right-handed 310
Helix 96	AK6	x	247	257	Right-handed alpha
Helix 97	AK7	x	270	287	Right-handed alpha
Helix 98	AK8	x	304	317	Right-handed alpha
Helix 99	AK9	x	353	358	Right-handed alpha
Helix 100	AL1	x	359	361	Right-handed 310
Helix 101	AL2	x	362	366	Right-handed 310
Helix 102	AL3	x	378	389	Right-handed alpha
Helix 103	AL4	x	406	416	Right-handed alpha
Helix 104	AL5	x	418	438	Right-handed alpha
Helix 105	AL6	x	451	459	Right-handed alpha
Helix 106	AL7	x	467	474	Right-handed alpha
Helix 107	AL8	x	502	515	Right-handed alpha
Helix 108	AL9	x	515	533	Right-handed alpha
Helix 109	AM1	x	536	558	Right-handed alpha

There are 28 sheets in PDB entry 7R72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	127	128	first strand
Strand 2	P	138	139	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	22	24	first strand
Strand 2	R	50	52	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	54	58	first strand
Strand 2	U	62	67	anti-parallel
Strand 3	U	13	18	anti-parallel
Strand 4	U	102	107	parallel
Strand 5	U	93	99	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	23	24	first strand
Strand 2	w	450	451	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	63	66	first strand
Strand 2	X	81	86	anti-parallel
Strand 3	X	120	126	anti-parallel
Strand 4	X	107	114	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	69	76	first strand
Strand 2	Z	40	48	anti-parallel
Strand 3	Z	22	29	anti-parallel
Strand 4	Z	9	13	anti-parallel
Strand 5	Z	80	86	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	22	25	first strand
Strand 2	c	89	94	anti-parallel
Strand 3	c	41	44	anti-parallel
Strand 4	c	66	69	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	12	15	first strand
Strand 2	d	70	75	anti-parallel
Strand 3	d	93	95	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	19	24	first strand
Strand 2	g	30	35	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	16	18	first strand
Strand 2	j	25	28	anti-parallel
Strand 3	j	33	34	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	3	5	first strand
Strand 2	k	51	56	parallel
Strand 3	k	37	46	anti-parallel
Strand 4	k	22	31	anti-parallel
Strand 5	k	74	77	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	399	405	first strand
Strand 2	t	14	20	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	428	434	first strand
Strand 2	m	801	806	anti-parallel
Strand 3	m	793	797	anti-parallel
Strand 4	m	781	786	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	440	445	first strand
Strand 2	m	451	456	anti-parallel
Strand 3	m	460	465	anti-parallel
Strand 4	m	471	476	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	488	493	first strand
Strand 2	m	502	506	anti-parallel
Strand 3	m	509	513	anti-parallel
Strand 4	m	587	593	anti-parallel
Strand 5	m	573	576	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	599	602	first strand
Strand 2	m	608	612	anti-parallel
Strand 3	m	621	625	anti-parallel
Strand 4	m	630	632	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	642	647	first strand
Strand 2	m	653	658	anti-parallel
Strand 3	m	662	666	anti-parallel
Strand 4	m	671	676	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	683	688	first strand
Strand 2	m	694	699	anti-parallel
Strand 3	m	704	708	anti-parallel
Strand 4	m	717	719	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	726	731	first strand
Strand 2	m	737	742	anti-parallel
Strand 3	m	747	753	anti-parallel
Strand 4	m	763	770	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	96	100	first strand
Strand 2	p	449	452	anti-parallel
Strand 3	p	439	444	anti-parallel
Strand 4	p	429	435	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	106	110	first strand
Strand 2	p	118	122	anti-parallel
Strand 3	p	127	130	anti-parallel
Strand 4	p	136	140	anti-parallel
Strand 5	p	196	197	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	147	154	first strand
Strand 2	p	157	162	anti-parallel
Strand 3	p	166	171	anti-parallel
Strand 4	p	199	205	anti-parallel
Strand 5	p	276	277	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	211	216	first strand
Strand 2	p	221	226	anti-parallel
Strand 3	p	230	235	anti-parallel
Strand 4	p	281	283	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	290	293	first strand
Strand 2	p	305	307	anti-parallel
Strand 3	p	311	316	anti-parallel
Strand 4	p	321	327	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	332	338	first strand
Strand 2	p	343	348	anti-parallel
Strand 3	p	352	356	anti-parallel
Strand 4	p	370	372	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	378	383	first strand
Strand 2	p	390	395	anti-parallel
Strand 3	p	399	404	anti-parallel
Strand 4	p	412	415	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	119	122	first strand
Strand 2	x	144	147	parallel
Strand 3	x	86	89	parallel
Strand 4	x	168	172	parallel
Strand 5	x	198	203	parallel
Strand 6	x	46	50	parallel
Strand 7	x	221	225	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	294	299	first strand
Strand 2	x	321	326	parallel
Strand 3	x	263	267	parallel
Strand 4	x	341	344	parallel
Strand 5	x	368	374	parallel
Strand 6	x	236	242	parallel
Strand 7	x	394	395	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7R72

Analysis of interatomic Contacts of Structural Units in PDB entry:
7R72