Analysis of interatomic Contacts of Structural Units in PDB entry:
7R78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R78 entry

There are 4 chains in PDB entry 7R78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 313SER 2317
D
 C 27 G 29
D
 G 31 T 34
E
 T 4 A 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 7R78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
320 332Right-handed alpha
Helix 2
AA2
A
335 343Right-handed alpha
Helix 3
AA3
A
357 374Right-handed alpha
Helix 4
AA4
A
391 400Right-handed alpha
Helix 5
AA5
A
410 414Right-handed 310
Helix 6
AA6
A
457 462Right-handed alpha
Helix 7
AA7
A
462 474Right-handed alpha
Helix 8
AA8
A
487 498Right-handed alpha
Helix 9
AA9
A
534 546Right-handed alpha
Helix 10
AB1
A
553 558Right-handed 310
Helix 11
AB2
A
563 574Right-handed alpha
Helix 12
AB3
A
590 604Right-handed alpha
Helix 13
AB4
A
628 633Right-handed alpha
Helix 14
AB5
A
636 652Right-handed alpha
Helix 15
AB6
A
669 673Right-handed 310
Helix 16
AB7
A
701 708Right-handed alpha
Helix 17
AB8
A
722 733Right-handed alpha
Helix 18
AB9
A
735 750Right-handed alpha
Helix 19
AC1
A
759 781Right-handed alpha
Helix 20
AC2
A
804 813Right-handed alpha
Helix 21
AC3
A
860 872Right-handed alpha
Helix 22
AC4
A
884 896Right-handed alpha
Helix 23
AC5
A
902 914Right-handed alpha
Helix 24
AC6
A
970 975Right-handed alpha
Helix 25
AC7
A
1019 1025Right-handed alpha
Helix 26
AC8
A
1044 1050Right-handed alpha
Helix 27
AC9
A
1188 1195Right-handed alpha
Helix 28
AD1
A
1237 1243Right-handed alpha
Helix 29
AD2
A
1243 1248Right-handed alpha
Helix 30
AD3
A
1306 1317Right-handed alpha
Helix 31
AD4
A
1342 1353Right-handed alpha
Helix 32
AD5
A
1406 1422Right-handed alpha
Helix 33
AD6
A
1468 1481Right-handed alpha
Helix 34
AD7
A
1504 1508Right-handed 310
Helix 35
AD8
A
1509 1519Right-handed alpha
Helix 36
AD9
A
1530 1536Right-handed alpha
Helix 37
AE1
A
1538 1543Right-handed alpha
Helix 38
AE2
A
1553 1557Right-handed 310
Helix 39
AE3
A
1558 1569Right-handed alpha
Helix 40
AE4
A
1583 1603Right-handed alpha
Helix 41
AE5
A
1610 1622Right-handed alpha
Helix 42
AE6
A
1727 1730Right-handed 310
Helix 43
AE7
A
1731 1739Right-handed alpha
Helix 44
AE8
A
1757 1769Right-handed alpha
Helix 45
AE9
A
1793 1797Right-handed 310
Helix 46
AF1
A
1806 1824Right-handed alpha
Helix 47
AF2
A
1847 1864Right-handed alpha
Helix 48
AF3
A
1881 1886Right-handed alpha
Helix 49
AF4
A
1895 1906Right-handed alpha
Helix 50
AF5
A
1920 1960Right-handed alpha
Helix 51
AF6
A
1971 1982Right-handed alpha
Helix 52
AF7
A
1983 1986Right-handed 310
Helix 53
AF8
A
1989 2002Right-handed alpha
Helix 54
AF9
A
2027 2068Right-handed alpha
Helix 55
AG1
A
2068 2076Right-handed alpha
Helix 56
AG2
A
2104 2114Right-handed alpha
Helix 57
AG3
A
2152 2163Right-handed alpha
Helix 58
AG4
A
2175 2177Right-handed 310
Helix 59
AG5
A
2178 2187Right-handed alpha
Helix 60
AG6
A
2201 2212Right-handed alpha
Helix 61
AG7
A
2227 2231Right-handed 310
Helix 62
AG8
A
2251 2265Right-handed alpha
Helix 63
AG9
A
2286 2301Right-handed alpha
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There are 14 sheets in PDB entry 7R78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 406first strand
Strand 2
A
380 386parallel
Strand 3
A
347 353parallel
Strand 4
A
433 435parallel
Strand 5
A
478 482parallel
Strand 6
A
519 524anti-parallel
Strand 7
A
503 508anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 665first strand
Strand 2
A
691 692anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 792first strand
Strand 2
A
1181 1182anti-parallel
Strand 3
A
1204 1212anti-parallel
Strand 4
A
1334 1341anti-parallel
Strand 5
A
1325 1330anti-parallel
Strand 6
A
1228 1230anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
838 840first strand
Strand 2
A
829 831anti-parallel
Strand 3
A
852 853anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
876 878first strand
Strand 2
A
1155 1157anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
923 927first strand
Strand 2
A
935 938anti-parallel
Strand 3
A
942 946anti-parallel
Strand 4
A
957 959anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1003 1018first strand
Strand 2
A
1034 1042anti-parallel
Strand 3
A
1058 1062anti-parallel
Strand 4
A
1072 1075anti-parallel
Strand 5
A
1088 1091anti-parallel
Strand 6
A
1104 1107anti-parallel
Strand 7
A
1121 1125anti-parallel
Strand 8
A
1137 1144anti-parallel
Strand 9
A
1003 1018anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1264 1265first strand
Strand 2
A
1363 1365anti-parallel
Strand 3
A
1450 1454anti-parallel
Strand 4
A
1429 1432anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1368 1370first strand
Strand 2
A
1444 1448anti-parallel
Strand 3
A
1435 1439anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1525 1528first strand
Strand 2
A
1547 1551parallel
Strand 3
A
1499 1503parallel
Strand 4
A
1719 1725parallel
Strand 5
A
1743 1750parallel
Strand 6
A
1460 1462parallel
Strand 7
A
1825 1826parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1842 1844first strand
Strand 2
A
2280 2282parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2095 2096first strand
Strand 2
A
2132 2133anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2169 2170first strand
Strand 2
A
2240 2241parallel
Strand 3
A
2276 2277parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2172 2173first strand
Strand 2
A
2220 2224parallel
Strand 3
A
2193 2195parallel
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