Analysis of interatomic Contacts of Structural Units in PDB entry:
7R7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R7M entry

There are 2 chains in PDB entry 7R7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 216
B
 MET 1TYR 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7R7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
25 29Right-handed 310
Helix 3
AA3
A
40 42Right-handed 310
Helix 4
AA4
A
43 51Right-handed alpha
Helix 5
AA5
A
76 82Right-handed alpha
Helix 6
AA6
A
91 95Right-handed 310
Helix 7
AA7
A
97 111Right-handed alpha
Helix 8
AA8
A
121 128Right-handed 310
Helix 9
AA9
A
140 143Right-handed 310
Helix 10
AB1
A
153 168Right-handed alpha
Helix 11
AB2
A
184 190Right-handed alpha
Helix 12
AB3
A
200 204Right-handed 310
Helix 13
AB4
A
205 215Right-handed alpha
Helix 14
AB5
B
13 24Right-handed alpha
Helix 15
AB6
B
25 29Right-handed 310
Helix 16
AB7
B
40 42Right-handed 310
Helix 17
AB8
B
43 52Right-handed alpha
Helix 18
AB9
B
53 55Right-handed 310
Helix 19
AC1
B
76 81Right-handed alpha
Helix 20
AC2
B
91 95Right-handed 310
Helix 21
AC3
B
97 111Right-handed alpha
Helix 22
AC4
B
121 125Right-handed 310
Helix 23
AC5
B
140 143Right-handed 310
Helix 24
AC6
B
153 168Right-handed alpha
Helix 25
AC7
B
184 190Right-handed alpha
Helix 26
AC8
B
200 204Right-handed 310
Helix 27
AC9
B
205 215Right-handed alpha
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There are 2 sheets in PDB entry 7R7M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
33 38parallel
Strand 3
A
57 60parallel
Strand 4
A
86 89parallel
Strand 5
A
114 119parallel
Strand 6
A
134 138parallel
Strand 7
A
174 177parallel
Strand 8
A
196 199parallel
Strand 9
A
2 7parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
33 38parallel
Strand 3
B
57 60parallel
Strand 4
B
86 89parallel
Strand 5
B
114 119parallel
Strand 6
B
134 138parallel
Strand 7
B
174 177parallel
Strand 8
B
196 199parallel
Strand 9
B
2 7parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il