Analysis of interatomic Contacts of Structural Units in PDB entry:
7R8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R8D entry

There are 2 chains in PDB entry 7R8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 72ARG 666
B
 ARG 72ARG 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7R8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
123 131Right-handed alpha
Helix 2
AA2
A
154 157Right-handed 310
Helix 3
AA3
A
173 186Right-handed alpha
Helix 4
AA4
A
189 204Right-handed alpha
Helix 5
AA5
A
213 217Right-handed 310
Helix 6
AA6
A
218 231Right-handed alpha
Helix 7
AA7
A
248 265Right-handed alpha
Helix 8
AA8
A
277 282Right-handed alpha
Helix 9
AA9
A
303 310Right-handed alpha
Helix 10
AB1
A
320 330Right-handed alpha
Helix 11
AB2
A
336 346Right-handed alpha
Helix 12
AB3
A
388 405Right-handed alpha
Helix 13
AB4
A
412 429Right-handed alpha
Helix 14
AB5
A
438 478Right-handed alpha
Helix 15
AB6
A
482 510Right-handed alpha
Helix 16
AB7
A
520 546Right-handed alpha
Helix 17
AB8
A
549 567Right-handed alpha
Helix 18
AB9
A
578 587Right-handed alpha
Helix 19
AC1
A
588 602Right-handed alpha
Helix 20
AC2
A
623 629Right-handed alpha
Helix 21
AC3
A
635 666Right-handed alpha
Helix 22
AC4
B
123 131Right-handed alpha
Helix 23
AC5
B
154 157Right-handed 310
Helix 24
AC6
B
173 186Right-handed alpha
Helix 25
AC7
B
189 204Right-handed alpha
Helix 26
AC8
B
213 217Right-handed 310
Helix 27
AC9
B
218 231Right-handed alpha
Helix 28
AD1
B
248 265Right-handed alpha
Helix 29
AD2
B
277 282Right-handed alpha
Helix 30
AD3
B
303 310Right-handed alpha
Helix 31
AD4
B
320 330Right-handed alpha
Helix 32
AD5
B
336 346Right-handed alpha
Helix 33
AD6
B
388 405Right-handed alpha
Helix 34
AD7
B
412 429Right-handed alpha
Helix 35
AD8
B
438 478Right-handed alpha
Helix 36
AD9
B
482 510Right-handed alpha
Helix 37
AE1
B
520 546Right-handed alpha
Helix 38
AE2
B
549 567Right-handed alpha
Helix 39
AE3
B
578 587Right-handed alpha
Helix 40
AE4
B
588 602Right-handed alpha
Helix 41
AE5
B
623 629Right-handed alpha
Helix 42
AE6
B
635 666Right-handed alpha
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There are 4 sheets in PDB entry 7R8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 108first strand
Strand 2
A
77 84anti-parallel
Strand 3
A
142 145anti-parallel
Strand 4
A
148 149anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
237 241parallel
Strand 3
A
268 272parallel
Strand 4
A
114 117parallel
Strand 5
A
286 291parallel
Strand 6
A
294 300anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 108first strand
Strand 2
B
77 84anti-parallel
Strand 3
B
142 145anti-parallel
Strand 4
B
148 149anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
237 241parallel
Strand 3
B
268 272parallel
Strand 4
B
114 117parallel
Strand 5
B
286 291parallel
Strand 6
B
294 300anti-parallel
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