Analysis of interatomic Contacts of Structural Units in PDB entry:
7R8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R8E entry

There are 2 chains in PDB entry 7R8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 72ARG 666
B
 ARG 72ARG 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7R8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
123 132Right-handed alpha
Helix 2
AA2
A
173 185Right-handed alpha
Helix 3
AA3
A
190 205Right-handed alpha
Helix 4
AA4
A
218 232Right-handed alpha
Helix 5
AA5
A
248 264Right-handed alpha
Helix 6
AA6
A
277 282Right-handed alpha
Helix 7
AA7
A
303 312Right-handed alpha
Helix 8
AA8
A
320 331Right-handed alpha
Helix 9
AA9
A
335 345Right-handed alpha
Helix 10
AB1
A
390 407Right-handed alpha
Helix 11
AB2
A
408 429Right-handed alpha
Helix 12
AB3
A
439 463Right-handed alpha
Helix 13
AB4
A
463 469Right-handed alpha
Helix 14
AB5
A
471 478Right-handed alpha
Helix 15
AB6
A
482 513Right-handed alpha
Helix 16
AB7
A
520 547Right-handed alpha
Helix 17
AB8
A
549 567Right-handed alpha
Helix 18
AB9
A
578 580Right-handed 310
Helix 19
AC1
A
581 587Right-handed alpha
Helix 20
AC2
A
588 602Right-handed alpha
Helix 21
AC3
A
624 629Right-handed alpha
Helix 22
AC4
A
635 664Right-handed alpha
Helix 23
AC5
B
123 132Right-handed alpha
Helix 24
AC6
B
173 185Right-handed alpha
Helix 25
AC7
B
190 205Right-handed alpha
Helix 26
AC8
B
218 232Right-handed alpha
Helix 27
AC9
B
248 264Right-handed alpha
Helix 28
AD1
B
277 282Right-handed alpha
Helix 29
AD2
B
303 312Right-handed alpha
Helix 30
AD3
B
320 331Right-handed alpha
Helix 31
AD4
B
335 345Right-handed alpha
Helix 32
AD5
B
390 407Right-handed alpha
Helix 33
AD6
B
408 429Right-handed alpha
Helix 34
AD7
B
439 463Right-handed alpha
Helix 35
AD8
B
463 469Right-handed alpha
Helix 36
AD9
B
471 478Right-handed alpha
Helix 37
AE1
B
482 513Right-handed alpha
Helix 38
AE2
B
520 547Right-handed alpha
Helix 39
AE3
B
549 567Right-handed alpha
Helix 40
AE4
B
578 580Right-handed 310
Helix 41
AE5
B
581 587Right-handed alpha
Helix 42
AE6
B
588 602Right-handed alpha
Helix 43
AE7
B
624 629Right-handed alpha
Helix 44
AE8
B
635 664Right-handed alpha
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There are 6 sheets in PDB entry 7R8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
142 145anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
237 241parallel
Strand 3
A
268 272parallel
Strand 4
A
114 116parallel
Strand 5
A
286 288parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
294 295anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
77 80anti-parallel
Strand 3
B
142 145anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
237 241parallel
Strand 3
B
268 272parallel
Strand 4
B
114 116parallel
Strand 5
B
286 288parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
294 295anti-parallel
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