Analysis of interatomic Contacts of Structural Units in PDB entry:
7R8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R8J entry

There are 2 chains in PDB entry 7R8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 764
T
 T 1 A 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7R8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 52Right-handed alpha
Helix 2
AA2
A
106 119Right-handed alpha
Helix 3
AA3
A
120 125Right-handed alpha
Helix 4
AA4
A
188 194Right-handed alpha
Helix 5
AA5
A
235 242Right-handed alpha
Helix 6
AA6
A
248 253Right-handed alpha
Helix 7
AA7
A
289 295Right-handed alpha
Helix 8
AA8
A
299 315Right-handed alpha
Helix 9
AA9
A
359 377Right-handed alpha
Helix 10
AB1
A
397 401Right-handed alpha
Helix 11
AB2
A
403 419Right-handed alpha
Helix 12
AB3
A
420 423Right-handed 310
Helix 13
AB4
A
439 453Right-handed alpha
Helix 14
AB5
A
476 489Right-handed alpha
Helix 15
AB6
A
499 504Right-handed alpha
Helix 16
AB7
A
526 539Right-handed alpha
Helix 17
AB8
A
540 544Right-handed 310
Helix 18
AB9
A
595 609Right-handed alpha
Helix 19
AC1
A
610 614Right-handed 310
Helix 20
AC2
A
630 648Right-handed alpha
Helix 21
AC3
A
707 711Right-handed 310
Helix 22
AC4
A
729 742Right-handed alpha
Helix 23
AC5
A
755 764Right-handed alpha
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There are 11 sheets in PDB entry 7R8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
671 674anti-parallel
Strand 4
A
685 686anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
137 139anti-parallel
Strand 3
A
149 161anti-parallel
Strand 4
A
144 146anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
137 139anti-parallel
Strand 3
A
149 161anti-parallel
Strand 4
A
167 179anti-parallel
Strand 5
A
7 11anti-parallel
Strand 6
A
323 327anti-parallel
Strand 7
A
318 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
18 25anti-parallel
Strand 4
A
88 97anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
199 204anti-parallel
Strand 3
A
278 280anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
260 264anti-parallel
Strand 3
A
270 274anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
231 234anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
344 345anti-parallel
Strand 3
A
549 550anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 431first strand
Strand 2
A
391 396parallel
Strand 3
A
460 465parallel
Strand 4
A
493 498parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 511first strand
Strand 2
A
514 519anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 585first strand
Strand 2
A
569 575anti-parallel
Strand 3
A
558 564anti-parallel
Strand 4
A
620 626parallel
Strand 5
A
655 662parallel
Strand 6
A
719 725anti-parallel
Strand 7
A
700 703anti-parallel
Strand 8
A
693 697anti-parallel
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