Analysis of interatomic Contacts of Structural Units in PDB entry:
7R8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R8K entry

There is 1 chain in PDB entry 7R8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1PHE 766
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7R8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 51Right-handed alpha
Helix 2
AA2
A
104 107Right-handed 310
Helix 3
AA3
A
108 119Right-handed alpha
Helix 4
AA4
A
119 124Right-handed alpha
Helix 5
AA5
A
188 194Right-handed alpha
Helix 6
AA6
A
235 242Right-handed alpha
Helix 7
AA7
A
249 253Right-handed 310
Helix 8
AA8
A
299 315Right-handed alpha
Helix 9
AA9
A
361 377Right-handed alpha
Helix 10
AB1
A
397 401Right-handed alpha
Helix 11
AB2
A
403 419Right-handed alpha
Helix 12
AB3
A
420 423Right-handed 310
Helix 13
AB4
A
439 454Right-handed alpha
Helix 14
AB5
A
476 490Right-handed alpha
Helix 15
AB6
A
501 504Right-handed 310
Helix 16
AB7
A
526 539Right-handed alpha
Helix 17
AB8
A
596 607Right-handed alpha
Helix 18
AB9
A
630 648Right-handed alpha
Helix 19
AC1
A
729 741Right-handed alpha
Helix 20
AC2
A
755 764Right-handed alpha
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There are 11 sheets in PDB entry 7R8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
333 335anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
168 179anti-parallel
Strand 3
A
149 157anti-parallel
Strand 4
A
137 139anti-parallel
Strand 5
A
128 129anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
278 280anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
232 233anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
270 274anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
351 352anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 431first strand
Strand 2
A
392 396parallel
Strand 3
A
460 465parallel
Strand 4
A
493 498parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 511first strand
Strand 2
A
514 519anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
568 575anti-parallel
Strand 3
A
580 587anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
568 575anti-parallel
Strand 3
A
561 565anti-parallel
Strand 4
A
623 626parallel
Strand 5
A
658 662parallel
Strand 6
A
719 725anti-parallel
Strand 7
A
700 703anti-parallel
Strand 8
A
693 695anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 674first strand
Strand 2
A
685 686anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il