Analysis of interatomic Contacts of Structural Units in PDB entry:
7R8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R8P entry

There is 1 chain in PDB entry 7R8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9GLU 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7R8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
38 45Right-handed alpha
Helix 3
AA3
A
48 53Right-handed alpha
Helix 4
AA4
A
62 64Right-handed 310
Helix 5
AA5
A
65 75Right-handed alpha
Helix 6
AA6
A
88 103Right-handed alpha
Helix 7
AA7
A
119 123Right-handed 310
Helix 8
AA8
A
126 134Right-handed alpha
Helix 9
AA9
A
135 137Right-handed 310
Helix 10
AB1
A
138 144Right-handed alpha
Helix 11
AB2
A
156 164Right-handed alpha
Helix 12
AB3
A
191 203Right-handed alpha
Helix 13
AB4
A
262 279Right-handed alpha
Helix 14
AB5
A
307 315Right-handed alpha
Helix 15
AB6
A
316 319Right-handed 310
Helix 16
AB7
A
334 349Right-handed alpha
Helix 17
AB8
A
358 363Right-handed 310
Helix 18
AB9
A
379 395Right-handed alpha
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There are 4 sheets in PDB entry 7R8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
106 109parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
83 86parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
170 174anti-parallel
Strand 4
A
187 189anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 303first strand
Strand 2
A
283 291anti-parallel
Strand 3
A
222 231anti-parallel
Strand 4
A
235 246anti-parallel
Strand 5
A
252 258anti-parallel
Strand 6
A
323 330anti-parallel
Strand 7
A
370 377anti-parallel
Strand 8
A
351 357anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il