Analysis of interatomic Contacts of Structural Units in PDB entry:
7R8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R8Q entry

There are 2 chains in PDB entry 7R8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9GLU 395
B
 ASN 9TYR 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7R8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
37 45Right-handed alpha
Helix 3
AA3
A
48 53Right-handed alpha
Helix 4
AA4
A
62 64Right-handed 310
Helix 5
AA5
A
65 75Right-handed alpha
Helix 6
AA6
A
88 102Right-handed alpha
Helix 7
AA7
A
119 123Right-handed 310
Helix 8
AA8
A
126 134Right-handed alpha
Helix 9
AA9
A
135 137Right-handed 310
Helix 10
AB1
A
138 143Right-handed alpha
Helix 11
AB2
A
158 164Right-handed alpha
Helix 12
AB3
A
191 205Right-handed alpha
Helix 13
AB4
A
206 209Right-handed 310
Helix 14
AB5
A
262 278Right-handed alpha
Helix 15
AB6
A
307 315Right-handed alpha
Helix 16
AB7
A
316 319Right-handed 310
Helix 17
AB8
A
334 348Right-handed alpha
Helix 18
AB9
A
358 363Right-handed 310
Helix 19
AC1
A
379 394Right-handed alpha
Helix 20
AC2
B
11 15Right-handed 310
Helix 21
AC3
B
37 45Right-handed alpha
Helix 22
AC4
B
48 53Right-handed alpha
Helix 23
AC5
B
62 64Right-handed 310
Helix 24
AC6
B
65 75Right-handed alpha
Helix 25
AC7
B
88 102Right-handed alpha
Helix 26
AC8
B
119 123Right-handed 310
Helix 27
AC9
B
126 134Right-handed alpha
Helix 28
AD1
B
135 137Right-handed 310
Helix 29
AD2
B
138 143Right-handed alpha
Helix 30
AD3
B
158 163Right-handed alpha
Helix 31
AD4
B
164 166Right-handed 310
Helix 32
AD5
B
191 205Right-handed alpha
Helix 33
AD6
B
262 279Right-handed alpha
Helix 34
AD7
B
307 315Right-handed alpha
Helix 35
AD8
B
316 319Right-handed 310
Helix 36
AD9
B
334 349Right-handed alpha
Helix 37
AE1
B
358 363Right-handed 310
Helix 38
AE2
B
379 395Right-handed alpha
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There are 8 sheets in PDB entry 7R8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
106 109parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
83 86parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
170 174anti-parallel
Strand 4
A
187 189anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 303first strand
Strand 2
A
283 291anti-parallel
Strand 3
A
222 231anti-parallel
Strand 4
A
235 246anti-parallel
Strand 5
A
252 257anti-parallel
Strand 6
A
323 330anti-parallel
Strand 7
A
370 377anti-parallel
Strand 8
A
351 357anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
106 109parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
83 86parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 155first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
170 174anti-parallel
Strand 4
B
187 189anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 303first strand
Strand 2
B
283 291anti-parallel
Strand 3
B
222 231anti-parallel
Strand 4
B
235 246anti-parallel
Strand 5
B
252 257anti-parallel
Strand 6
B
323 330anti-parallel
Strand 7
B
370 377anti-parallel
Strand 8
B
351 357anti-parallel
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