Analysis of interatomic Contacts of Structural Units in PDB entry:
7R8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R8Y entry

There are 2 chains in PDB entry 7R8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ALA 243
B
 MET 1ALA 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7R8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
54 69Right-handed alpha
Helix 3
AA3
A
81 95Right-handed alpha
Helix 4
AA4
A
116 118Right-handed 310
Helix 5
AA5
A
119 127Right-handed alpha
Helix 6
AA6
A
128 131Right-handed 310
Helix 7
AA7
A
137 146Right-handed alpha
Helix 8
AA8
A
151 164Right-handed alpha
Helix 9
AA9
A
209 222Right-handed alpha
Helix 10
AB1
A
225 243Right-handed alpha
Helix 11
AB2
B
17 28Right-handed alpha
Helix 12
AB3
B
54 66Right-handed alpha
Helix 13
AB4
B
81 95Right-handed alpha
Helix 14
AB5
B
116 127Right-handed alpha
Helix 15
AB6
B
128 131Right-handed 310
Helix 16
AB7
B
137 146Right-handed alpha
Helix 17
AB8
B
151 164Right-handed alpha
Helix 18
AB9
B
211 222Right-handed alpha
Helix 19
AC1
B
225 239Right-handed alpha
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There are 4 sheets in PDB entry 7R8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
31 42anti-parallel
Strand 3
A
3 11parallel
Strand 4
A
73 76parallel
Strand 5
A
100 102parallel
Strand 6
A
133 134parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
191 195anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
31 40anti-parallel
Strand 3
B
3 11parallel
Strand 4
B
73 76parallel
Strand 5
B
100 102parallel
Strand 6
B
133 134parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
185 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il