Analysis of interatomic Contacts of Structural Units in PDB entry:
7R9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R9F entry

There are 2 chains in PDB entry 7R9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 72LYS 493
B
 A 2 C 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7R9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 112Right-handed alpha
Helix 2
AA2
A
155 162Right-handed alpha
Helix 3
AA3
A
197 200Right-handed 310
Helix 4
AA4
A
206 215Right-handed alpha
Helix 5
AA5
A
227 244Right-handed alpha
Helix 6
AA6
A
268 286Right-handed alpha
Helix 7
AA7
A
290 304Right-handed alpha
Helix 8
AA8
A
311 314Right-handed 310
Helix 9
AA9
A
359 375Right-handed alpha
Helix 10
AB1
A
379 385Right-handed alpha
Helix 11
AB2
A
396 398Right-handed 310
Helix 12
AB3
A
407 413Right-handed alpha
Helix 13
AB4
A
423 426Right-handed 310
Helix 14
AB5
A
427 439Right-handed alpha
Helix 15
AB6
A
439 451Right-handed alpha
Helix 16
AB7
A
451 461Right-handed alpha
Helix 17
AB8
A
484 488Right-handed 310
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There are 2 sheets in PDB entry 7R9F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
138 148anti-parallel
Strand 3
A
400 406parallel
Strand 4
A
187 195anti-parallel
Strand 5
A
344 353anti-parallel
Strand 6
A
325 333anti-parallel
Strand 7
A
306 309anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 174first strand
Strand 2
A
75 83anti-parallel
Strand 3
A
138 148anti-parallel
Strand 4
A
400 406parallel
Strand 5
A
187 195anti-parallel
Strand 6
A
344 353anti-parallel
Strand 7
A
337 339anti-parallel
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